Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236745.1_202017-07-
28] 658 sequences; 37,414,534 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq636 159 7e-34
seq476 120 6e-22
seq376 116 8e-21
seq19 113 9e-20
seq332 111 3e-19
seq144 109 1e-18
>seq636
Length=763551
Score = 159 bits (176), Expect = 7e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| |||| || | || |||||| |||||||||||||| |
Sbjct 54672 ACCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGA 54731
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || |||||||| || || || || ||||| |||| || || |||||| ||
Sbjct 54732 CAGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGTCAGGTGG 54791
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| |||||||| | || || | ||||| ||||| | |||||
Sbjct 54792 GATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGCTGGACTCGAC 54851
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | |||||| ||||| ||||||||
Sbjct 54852 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 54899
Score = 158 bits (174), Expect = 3e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || || || |||| || | ||| || || ||||||||||| || | |
Sbjct 54445 CCTCCACGGAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGAA 54504
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||| ||||| || || || ||||| ||||| | ||| || ||||| ||
Sbjct 54505 AGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 54564
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||||||||||||||||| || ||| | ||||| ||||| || | ||| |||
Sbjct 54565 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATCGTGTCGGATGATTCCACT 54624
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | ||||| ||||| || |||||
Sbjct 54625 TCGAGTGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATTTGCAT 54671
Score = 129 bits (142), Expect = 1e-24
Identities = 153/205 (75%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || || ||||| | ||||| || || || ||||||||||| |
Sbjct 54900 ACCACCACGAAGACGGAGGACGAGATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCGGA 54959
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| || ||||| || || || || || || ||||| ||||| |||||| ||
Sbjct 54960 CAGGGTGCGACCGTCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGTTGCTGGTCAGGTGG 55019
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||| || ||||| || |||||| ||||| || || | ||||| ||||| || | || |
Sbjct 55020 AATGCCTTCCTTATCCTGGATC-TTGCTCTTCACATTGTCGATGGTGTCGGACGACTCAA 55078
Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075
| ||||| || || ||||| || ||
Sbjct 55079 CCTCGAGGGTAATGGTCTTGCCGGT 55103
>seq476
Length=243870
Score = 120 bits (132), Expect = 6e-22
Identities = 136/180 (76%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | || ||||| |||||||| | || || || || ||||||
Sbjct 53818 TTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCCAACTGCTTTCCAGCGAAGATC 53877
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATC 283030
||||| || ||||| || || ||||||||||| |||||| ||||| || || | ||
Sbjct 53878 AAACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATC-TTGCTCTTGACATTGTC 53936
Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
||| ||||| | ||||| ||||| ||||| ||||| || || | ||||| |||||
Sbjct 53937 GATGGTGTCGCTCGACTCGACCTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTTACGAA 53996
>seq376
Length=291155
Score = 116 bits (128), Expect = 8e-21
Identities = 111/141 (79%), Gaps = 1/141 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| || || || || || | ||||| || || || ||||||||||| |
Sbjct 11877 ACCACCACGCAGACGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 11936
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || ||||| |||||||| || || ||||| ||
Sbjct 11937 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGG 11996
Query 282992 AATACCCTCCTTGTCT-TGGA 283011
||| |||||||||||| ||||
Sbjct 11997 AATTCCCTCCTTGTCTGTGGA 12017
>seq19
Length=52387
Score = 113 bits (124), Expect = 9e-20
Identities = 341/513 (66%), Gaps = 18/513 (4%)
Strand=Plus/Minus
Query 301402 CGATGCTTAAAGATAGCGATGCTTAAAATGGACCCCTATATCAACGTCGATCCGGGGACG 301461
||| | || ||| || | || | ||| | || || || ||||| |||| ||||| ||
Sbjct 12759 CGAGGGTTGAAGGTAACCATTCAAAAATTTGATCCATACATCAATATCGACCCGGGAACA 12700
Query 301462 ATGAGCCCGACTCAACATGGAGAAGTGTTCGTGACGGATGATGGTGCTGAAACCGATCTG 301521
||||| || ||| ||||| || ||||| || ||||||||||| || ||||| |||||
Sbjct 12699 ATGAGTCCTTATCAGCATGGTGAGGTGTTTGTAACGGATGATGGCGCGGAAACGGATCTT 12640
Query 301522 GATCTGGGGCACTACGAACGTTTCACT-TCATTAACC-CTTAAGCGTGAAAGTAATTTTA 301579
|| || || |||||||||||||| | | ||| |||| || | | || || | |
Sbjct 12639 GACCTTGGCCACTACGAACGTTTTATTGACATCAACCTCTCCA--AAAACAGCAACGTCA 12582
Query 301580 CGACTGGCCAAGTTTATTTAAAAGTTATCGAAAATGAAC-GCGAAGGTAGCTATCTCGGA 301638
||||||| |||| || | || ||| || || | ||| || | ||||| ||
Sbjct 12581 CGACTGGTAAAGTATACTCCTCCGTCATCAGCAAAGAGCGGCGCGGGGA-ATATCTGGGC 12523
Query 301639 AAGACGGTGCAAGTTGTTCCCCACATCACCGATGAAATCAAA-AG-AAGAATT---CACA 301693
||||| ||||| |||| |||||||| | || |||||| || | ||| | ||
Sbjct 12522 GGAACGGTACAAGTCATTCCACACATCACGAACGAGATCAAAGAGCGTGTATTCCGCGCA 12463
Query 301694 TTGCGGCTGAA---AAATCAGATATACTTATTGGAGAAATTGGAGGAACGGTCGGAGATA 301750
|| |||| || ||| | ||||| || ||||| || ||||| || || |
Sbjct 12462 GGACG--TGAAGCGGGTTCGGATGTCGTTATTACGGAGATTGGCGGTACGGTGGGTGACA 12405
Query 301751 TCGAATCGCTT-CCTTTTATAGAAGCGATTCGTCAACTCTCTCATGACGAAGGAACGGCC 301809
||||| |||| ||||| | ||||| ||||||||| || ||| | ||| | |
Sbjct 12404 TCGAA-AGCTTGCCTTTCCTGGAAGCTATTCGTCAAATCAAGAGTGATGTAGGTCGTGAC 12346
Query 301810 AATGTTCTGTTCATTCATCTCGTGCTCTTACCCTATATAGCGACTGCTGGTGAGTTGAAA 301869
|| || ||| ||| ||| | || | || || || | |||||||||| |||||
Sbjct 12345 AACGTCATGTACATCCATGTAACACTTATCCCTTACATCAAGGCTGCTGGTGAAGTGAAA 12286
Query 301870 TCAAAGCCAGCACAGCATTCGGTTAAAGAATTG 301902
| || ||| | ||||| || || ||||||
Sbjct 12285 ACCAAACCAACTCAGCACAGTGTGAAGGAATTG 12253
>seq332
Length=955770
Score = 111 bits (122), Expect = 3e-19
Identities = 251/377 (67%), Gaps = 3/377 (1%)
Strand=Plus/Plus
Query 312486 CGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATCG 312545
|| |||||| | | | | ||||| || || |||||| |||| || | || ||| |||
Sbjct 772952 CGTCCCCACATCAAAGCCTTGACGATCGAGGCGAAGTTGTCGTCCATCAAAATGATGTCG 773011
Query 312546 GCTGCTTCCTTTGCAATGTCTGT---ACCACTCCCCATTGCACACCCGACGTCTGCTTCC 312602
| ||||||||||| | ||||| | || | ||| ||| ||||||| || || ||
Sbjct 773012 GAGGCTTCCTTTGCGACTTCTGTGCCAGCAATGTTCATGGCAAACCCGACATCAGCAGCC 773071
Query 312603 TTAAGAGCCGGGGCGTCGTTAGCACCATCGCCACTCGATGCGACGACGTGGCCAAGGGCC 312662
|| || || || |||||||| | |||||| ||| | |||||| | ||| | |
Sbjct 773072 TTTAGGGCAGGAGCGTCGTTGGTACCATCTCCAGTGACAGCGACGGTCTCGCCCATCTCT 773131
Query 312663 TTCATGAGCTGAACCAACTTATACTTATCCTCTGGGGATGAACGGGCAAGAACTTTCAGC 312722
|||| | ||| ||||| | | ||| || || || || || || || ||||| | |||
Sbjct 773132 TTCAGGCGCTTGACCAAGGTCTTCTTGTCGTCGGGAGAAGATCGCGCGAGAACCTGCAGT 773191
Query 312723 TTAGGTGCGATGGCAACCTGTTCATCGTTACTCATTGCCCGGAATTCCTTACCTTCAATG 312782
|| || ||| || ||| ||| || ||||| ||||||||| |||||| |
Sbjct 773192 TTTGGAATGATAGCCTTCTGCTCAGTCTTGCTCATCTTGCGGAATTCCGGACCTTCGAGT 773251
Query 312783 GCGATATCCCCGTGCTTCAGCATACCGATTTCACTGGCAATGTGCTTCGCCGTCTGGATG 312842
|| | | | || | | | || || || ||||||| ||| |||||| | |||
Sbjct 773252 GCAACACCACCTGGGGTGAAGATGCCACACTCGGTGGCAATAGCCTTTGCCGTCAGAATG 773311
Query 312843 TTATCACCGGTAACCAT 312859
|| || || ||||||||
Sbjct 773312 TTGTCTCCAGTAACCAT 773328
>seq144
Length=510160
Score = 109 bits (120), Expect = 1e-18
Identities = 156/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGG 230250
|||||||| | |||||| |||| ||| ||| | || ||||| |||| ||||||
Sbjct 266984 AGGAGTTCTTGACAGACGCTCTTCCATGCAAGCTTCTGGGGATGAACGCTGGCCTCATGT 266925
Query 230251 GGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGT 230310
||||| || |||||||| || ||||| | | | || || || || |||| | |
Sbjct 266924 CACAATACATTGAATTCGTCGCCGATCGCCTACTGTTAGCACTCGGCAACAAGAAGTTCT 266865
Query 230311 ATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACT 230370
| ||| ||| |||||||||| || |||||| |||||| || || || || ||||
Sbjct 266864 ACAACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTGGGCGGCAAGACCAACT 266805
Query 230371 TCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410
||||||| |||||||| |||| || || | | | |||||
Sbjct 266804 TCTTCGAGAAGCGTGTTGGCGAGTACCAGAAGGCTGGTGT 266765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046730375334332
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |