Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236755.1_202017-07-
28] 146 sequences; 30,106,281 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq114 109 5e-19
seq81 93.3 4e-14
>seq114
Length=1292865
Score = 109 bits (120), Expect = 5e-19
Identities = 383/583 (66%), Gaps = 19/583 (3%)
Strand=Plus/Minus
Query 153732 TGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCT 153791
|||||||| |||||||| ||||||||||| || ||| | ||||||||||| ||||
Sbjct 1036173 TGATTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTC 1036114
Query 153792 TGAATTTCTATAATAG--TACGCATCAATG-TGACCGCGGGCATTTGATCGCGAAACTGG 153848
|| || | ||||| ||| ||| | ||| | || | | || || || |
Sbjct 1036113 TGCGCCTCGAGAATAGCATAC-CATATTTTCTGAGCACGAACCGTC--TCACGGCCCTTG 1036057
Query 153849 CCCTTGTCT-TCGTAGTGTTTGTACCAGTATTCAAACTCATCACC--AAACGTATTGTTA 153905
|| || ||| || || | | |||| | | ||||| ||||| |||| ||
Sbjct 1036056 CC-TTCTCTCTCATAACGCTCGTACAGCTCCTTGAACTCGTCACCGTAAAC--ATCCGAC 1036000
Query 153906 AGCTCGGGACATTCGTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGC 153965
|| | || ||||||||||| |||||||| | ||| ||| || | || || || ||
Sbjct 1035999 AGACCAGGGCATTCGTTGGGGCACATCAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGC 1035940
Query 153966 ATAAATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTG 154025
||||| | |||||||| ||| || |||| | || |||||||| ||||| |
Sbjct 1035939 ATAAAGAGATCGGGAATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTT 1035880
Query 154026 CCAATGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAA 154085
||| ||| || | || | || | ||| | ||| ||||||||| || | |||
Sbjct 1035879 CCATGGTTCTTGCGAAGGTCCATGAACTGCATGACGTCTGCATGCCACGGCTCAAGGTAG 1035820
Query 154086 ACTGCTTGAGCGCCTTTACGC---TTGCCGCCCTGATTTACGTGACGCACCATATTGTTG 154142
| || ||| ||| |||| ||||| ||||| | |||| ||| | | |||||
Sbjct 1035819 ATGGCAAAAGCACCTGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTA 1035760
Query 154143 AAAACCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCT-TGCT 154201
| || || ||||| |||| |||||| ||| || |||||||| ||| | ||
Sbjct 1035759 TAGACTCGTAGCATTGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAG 1035700
Query 154202 GTTGCGGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCAT 154261
|| |||| | | | ||| || | | ||||||||||| ||| |||||||||||
Sbjct 1035699 CCTGTGGCC-CTGATGTTGTGAACATGAAGACCAATACCGCCAGCGTTCTTGGAGATCAT 1035641
Query 154262 GGCGCA-ATCGTTCAATGTGTTATAGATACCACGAATGCTATC 154303
||| || ||| || | || | ||||||||| |||||| ||
Sbjct 1035640 GGCACATATC-TTGAGGGTATCGTAGATACCATCAATGCTGTC 1035599
>seq81
Length=1972082
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
||||| || || | ||||| || ||||| | || ||||| || || ||||| |||||
Sbjct 1264645 TGGCCTCCACGGAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCC 1264704
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
| ||| | ||| || ||||| || || || |||| ||||| ||||| || ||
Sbjct 1264705 GAAAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGT 1264764
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714
|| ||||| || ||||| ||| ||| || | | || | ||||||| | |||
Sbjct 1264765 GGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATCGTGTCGGATGATTCC 1264824
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| || | || | ||||||||||| | || || ||||| |||||||||
Sbjct 1264825 ACTTCGAGTGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATTTGCATA 1264875
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||| | || || ||||| || ||||| || ||| |
Sbjct 1264876 CCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGAC 1264935
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | || |||||||| || || ||| | ||||| || ||||| || || ||
Sbjct 1264936 AGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGTCAGGTGGG 1264995
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| || || ||||| ||| || || | | || | |||||| ||| ||| |||
Sbjct 1264996 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGCTGGACTCGACC 1265055
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| | ||| | ||||||||||| | || || ||||| || ||||||
Sbjct 1265056 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCATA 1265103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496063094683200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |