Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236925.1_202017-07-
28] 7,691 sequences; 41,753,485 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq379 131 2e-25
>seq379
Length=54504
Score = 131 bits (144), Expect = 2e-25
Identities = 625/981 (64%), Gaps = 32/981 (3%)
Strand=Plus/Minus
Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764
|||| || |||||||| || || || ||||||| | | | | || | || ||||||
Sbjct 5323 GCAAGCGAAGCCAGATTGCAGACAGCGACCTCATCCGGAGCAGAGTACTCCATGATCTCA 5264
Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824
||||| | |||| | ||||||||| || | ||| | || || ||||| |||
Sbjct 5263 GTGCACAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCG 5204
Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884
|| ||||| || |||||||| || || || || || |||| | || | ||| || | |
Sbjct 5203 GCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTCGAGAATAGCATAC 5144
Query 53885 CAGAC-----GA-CACGAGCCTTTATTATAGATTTGTATCTCTT---TTCTCTTTCGTAT 53935
|| | || ||||| || | | | | | ||| |||||| || ||
Sbjct 5143 CATATTTTCTGAGCACGAACCGTC-TCACGG--------CCCTTGCCTTCTCTCTCATAA 5093
Query 53936 AGTGTATACAA-TCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 53994
| |||| || || || |||||| || | |||| || ||||| ||||| |
Sbjct 5092 CGCTCGTACAGCTCCTTGAA-CTCGTCACCGTAGACATCCGACAGACCAGGGCATTCGTT 5034
Query 53995 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 54054
|| ||||| | | ||| |||| | | || || | |||||||||||| |||||
Sbjct 5033 GGGGCACATTAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGGAAT 4974
Query 54055 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 54114
||| ||||| || | ||| | | | | ||| || ||||| ||||| |||
Sbjct 4973 CCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAAG 4914
Query 54115 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGG 54174
|| | |||| ||| | || | |||||||| || | ||| |||| | | | || ||
Sbjct 4913 GTCCATGAACTGCATGACGTCTGCGTGCCACGGCTCAAGGTAGATGGCAAAAGCACCTGG 4854
Query 54175 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 54234
|| ||||| || ||||| || | ||| | || ||||| || || |||| | ||||||
Sbjct 4853 ACGCTTGTTGCCACCCTGGTCAACGTAACGTGCAGTGTTGTTGTAGACTCGTAGCATTGG 4794
Query 54235 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 54294
| || ||| ||||||| || || || ||| || || || | || | || ||
Sbjct 4793 TACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTAGCCCTGATGTT 4734
Query 54295 ACTAA-TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 54353
|| ||| ||||| || || || || | || ||||| | || ||| || | |
Sbjct 4733 GTGAACATGA-AGACCAATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGG 4675
Query 54354 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 54413
| || ||||| || || || || |||||| ||||| | | || ||| || |
Sbjct 4674 TGTCGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAG---GATGCTA 4618
Query 54414 GGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 54469
| || || || || || ||| | || | || || ||||| || || || | ||
Sbjct 4617 GCTG-CGCCTGTGGGGTACCAGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACTTC 4559
Query 54470 TCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTAC 54528
|| | |||| ||||| |||||||| |||| || || || ||||| || ||
Sbjct 4558 AACGACATGTAG-TTGTATGTCTCGATCGCTGCTTCAATGTCTTCCCCGTGAATGCCGAC 4500
Query 54529 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAA 54588
|| |||||||| | ||| || || ||||| || | | |||| | ||| | || |
Sbjct 4499 AGCCACACGCATGATCATCTGTTGCGGTCTCTCGGCAACCTTGCCATCAATTCTGAGAAG 4440
Query 54589 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 54648
||| ||| |||| ||| || || || || || | ||| ||||| || || || |
Sbjct 4439 GTATGATCGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGAC 4380
Query 54649 AATAACTGAGTTGAGTTTATC 54669
||| | ||||| || | |||
Sbjct 4379 AATGGCCGAGTTCAGCTCATC 4359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593664521089680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |