Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236925.1_202017-07-
28] 7,691 sequences; 41,753,485 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq379 116 5e-21
>seq379
Length=54504
Score = 116 bits (128), Expect = 5e-21
Identities = 450/698 (64%), Gaps = 18/698 (3%)
Strand=Plus/Minus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
||||| ||||| || || ||||| | | ||| || | | | || || | ||||
Sbjct 5047 CCAGGGCATTCGTTGGGGCACATTAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATA 4988
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
|||||||| |||||||| ||||| || | ||| | | | | || || |||||
Sbjct 4987 AAGAGATCGGGAATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCA 4928
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
||||| ||| || | |||| ||| | || | |||||||| || | ||| |||
Sbjct 4927 TGGTTCTTGCGAAGGTCCATGAACTGCATGACGTCTGCGTGCCACGGCTCAAGGTAGATG 4868
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | | || || || ||||| || ||||| || | ||| | || ||||| || ||
Sbjct 4867 GCAAAAGCACCTGGACGCTTGTTGCCACCCTGGTCAACGTAACGTGCAGTGTTGTTGTAG 4808
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|||| | |||||| | || ||| ||||||| || || || ||| || || ||
Sbjct 4807 ACTCGTAGCATTGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCT 4748
Query 72274 CTGGCACGAATATTGCTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332
| || | || ||| || ||| ||||| || || || || | || ||||| | ||
Sbjct 4747 GTAGCCCTGATGTTGTGAACATGA-AGACCAATACCGCCAGCGTTCTTGGAGATCATGGC 4689
Query 72333 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 72392
||| || | || || ||||| || || || || |||||| ||||| | | ||
Sbjct 4688 ACATATCTTGAGGGTGTCGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAA 4629
Query 72393 ACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448
||| || | | || || || || || ||| | || | || || ||||| |
Sbjct 4628 GCAG---GATGCTAGCTG-CGCCTGTGGGGTACCAGCACTGAAAAGTGTTGGCGAAGCAT 4573
Query 72449 GCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTAT---ATCC 72504
| || || | || |||| |||| ||||| ||||| || |||| ||| || |||
Sbjct 4572 GTGTGAAGTACTTCAACGACATGTAG-TTGTATGTCTCGATCGCTGCTTCAATGTCTTCC 4514
Query 72505 CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564
| ||| || || || || |||||||| | ||| || || ||||| || | | ||||
Sbjct 4513 CCGTGA---ATGCCGACAGCCACACGCATGATCATCTGTTGCGGTCTCTCGGCAACCTTG 4457
Query 72565 TTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 72624
|| ||| | | | ||| ||| |||| ||| || || || || || | |||
Sbjct 4456 CCATCAATTCTGAGAAGGTATGATCGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTG 4397
Query 72625 AAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATC 72662
||||| || || || | ||| |||| || || | |||
Sbjct 4396 AAGTCGCGGTCATAGACAATGGCCGAGTTCAGCTCATC 4359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671074678355160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |