Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236925.1_202017-07- 28] 7,691 sequences; 41,753,485 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq260 87.8 2e-12 >seq260 Length=339642 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || ||| |||||| || ||||||||||| | || ||| || |||||| Sbjct 135403 CACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCCG-AAAGTGTCCGGCCGTCCT 135461 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| ||| || | || | ||||||||| ||| || | | |||||||| Sbjct 135462 CAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTT 135521 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || ||||| | | || || || |||| || ||| |||| ||| || || Sbjct 135522 GGATCTTTGACTTGACGTTGTCG--ATCGTGTCGGATGATTCCACTTCGAGTGTGATAGT 135579 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || || || ||||| ||||| Sbjct 135580 CTTGCCGGTGAGTGTCTTGACGAAAATTTGCAT 135612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421211714413691