Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236925.1_202017-07- 28] 7,691 sequences; 41,753,485 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq260 131 1e-25 seq3236 93.3 4e-14 seq2864 84.2 2e-11 >seq260 Length=339642 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | ||||| || || |||| || ||||||||| | || Sbjct 135612 ATGCAAATTTTCGTCAAGACACTCACCGGCAAGACTATCACACTCGAAGTGGAATCATCC 135553 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| ||| || |||||||||||||| || ||||| || || Sbjct 135552 GACACGATCGACAACGTCAAGTCAAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 135493 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||| || | || ||||||||| Sbjct 135492 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCGGATTACAAC 135433 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || || || |||| | || ||||| Sbjct 135432 ATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGTCTCCGTGGAGG 135386 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || || |||| || || || || ||| | Sbjct 135840 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 135781 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || |||||||||||||| ||||| || || Sbjct 135780 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 135721 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | |||||| || || | ||||| |||||| Sbjct 135720 CAGCGCCTGATTTTTGCAGGCAAGCAGCTCGAGGATGGTCGTACTCTGTCCGACTACAAC 135661 Query 22399 ATTCAAAAAGAATCCAC 22415 || || |||||||| || Sbjct 135660 ATCCAGAAAGAATCGAC 135644 >seq3236 Length=283868 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||| |||||||| || || || || | || || |||||||| ||| | || Sbjct 201443 AGACAAGGAGGGAATTCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGA 201502 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGA 22409 |||| ||||||| ||||||| ||||||||||| || || Sbjct 201503 GGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGA 201541 >seq2864 Length=266724 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || || || | | ||| ||| | ||| || |||| Sbjct 248131 ACTGGCAAGACCATCACGCTCGAGGTCGAGTCGAGCGACACCATCGACAATGTCAAGAGC 248072 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || ||||| || || || ||| | || || || || || Sbjct 248071 AAGATCCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGTTTGATCTTCGCTGGAAAG 248012 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||||| |||||| |||||| ||||||| || ||||| || || Sbjct 248011 CAGTTGGAGGATGGTCGCACCCTCTCCGACTATAACATCCAGAA 247968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419688657189415