Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236925.1_202017-07- 28] 7,691 sequences; 41,753,485 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq379 143 4e-29 >seq379 Length=54504 Score = 143 bits (158), Expect = 4e-29 Identities = 446/673 (66%), Gaps = 22/673 (3%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||||| |||||| |||||||| ||| || ||| | || | || || |||||| Sbjct 5276 CTCCATGATCTCAGTGCACAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGGTTGCT 5217 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001 ||||||||| || ||||||||||| ||||| || | ||| |||| |||| | || Sbjct 5216 CTTGCGGTTGGCGGCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTC 5157 Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATC-CCTTGAGAC 205060 | ||||| ||| | || |||| || || |||| | | |||| | Sbjct 5156 G-AGAATAGCATACCATATTTTCTGAGCACGAACCGTCT-CACGGCCCTTGCCTTCTCTC 5099 Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACAT 205120 || || ||||||| || || || |||||| || ||| ||| || || ||| Sbjct 5098 TCATAACGCTCGTACAGCTCCTTGAACTCGTCACCGTAGACATCCGACAGACCAGGGCAT 5039 Query 205121 TTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACAGGTC 205179 | ||||| ||||| |||| ||| | | | || | || || | || |||||| || || Sbjct 5038 TCGTTGGGGCACATTAGAGTCCAAGTGCCGTTC-TGTTCGACACGCTGCATAAAGAGATC 4980 Query 205180 GCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTT 205239 | ||||| || |||| |||| ||| || || | || | | || | |||| ||||||| Sbjct 4979 GGGAATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTT 4920 Query 205240 TTTCAAGTCCAGCCAAGCCGCA--ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATT 205297 | ||||| | | ||| | ||| |||||||||||||| | | | ||| | Sbjct 4919 GCGAAGGTCCATGAA--CTGCATGACGTCTGCGTGCCACGGCTCAAGGTAGATGGCAAAA 4862 Query 205298 GCGCCTGGCCTCTTGTTCCCACCCTGGTCCAC----CATGCGAGTCATCGCGTTGAAAAC 205353 || ||||| | |||||| ||||||||||| || | ||| ||| | |||| | || Sbjct 4861 GCACCTGGACGCTTGTTGCCACCCTGGTCAACGTAACGTGC-AGTGTT---GTTGTAGAC 4806 Query 205354 TCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTC 205413 ||| ||||| || || |||||||||| || ||||| |||| | ||| |||||| Sbjct 4805 TCGTAGCATTGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGT 4746 Query 205414 AGCCCTCACGTTG-GAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGC 205472 |||||| | |||| || | | ||||| ||||||| ||||| |||| ||| | Sbjct 4745 AGCCCTGATGTTGTGAACATGAAG-ACCAATACCGCCAGCGTTCTTGGAGATCATGGCAC 4687 Query 205473 A-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAG 205531 | ||||| || ||| |||||| || | ||| || ||| || | ||||| || Sbjct 4686 ATATCTTG-AGGGTGTCGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAG 4628 Query 205532 CACGAAGCCAGCT 205544 || || || |||| Sbjct 4627 CAGGATGCTAGCT 4615 Score = 86.0 bits (94), Expect = 1e-11 Identities = 222/336 (66%), Gaps = 2/336 (1%) Strand=Plus/Minus Query 204185 GGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAAT 204244 ||||||| || ||| || || || | || ||| | || | | | | |||| | ||| || Sbjct 5893 GGGTTGACGACCTGGAACTCGCCAGCCAACACACGACGAGAGTAAATGTTGCTTGTGTAT 5834 Query 204245 GGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCC 204304 || ||||| |||||| ||| | ||||| | ||| ||| || ||||| || || Sbjct 5833 GGCTCGAAGCACTCGTTAAAGCCCATGATCTGCGAGGTCGAGGCTGTTGGCATCGGCGCA 5774 Query 204305 AGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCG 204364 | ||| || |||||||||||||||| | || | ||| ||| || | || |||||| Sbjct 5773 ACGAGAAGCGAGTTGCGCACACCGTGCTGGGCGATCTTGCCCTTGAGTGCGGCCCAGTCC 5714 Query 204365 TGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGG 204424 | | | || || ||||||||||||| |||| | ||| || ||||| Sbjct 5713 CAGAGGTCGGTAGGAGTCTTGCCCCACATGTCGTACTGGAGCTCGCCCTGCGATACTGGA 5654 Query 204425 CTGCCCTTGTACGTCGGATAAGG-CTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCAT 204483 ||| ||| ||| ||||| | || | || || || |||| ||| || || | | Sbjct 5653 GAGCCTGGGTATGTCTCGTAAGGACCGAGCTTC-TCAGCAAGCTCGCATGAAGCCTCAAG 5595 Query 204484 GGCGTGATAGTACATGGTCTCAAAGATCTGAACGTT 204519 || || || ||||||||||| ||||| | ||| Sbjct 5594 AGCAGCATGATAGATGGTCTCAAAAATCTGGATGTT 5559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795078755766960