Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236925.1_202017-07-
28] 7,691 sequences; 41,753,485 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq260 140 4e-28
seq2864 123 3e-23
seq3236 107 2e-18
>seq260
Length=339642
Score = 140 bits (154), Expect = 4e-28
Identities = 173/234 (74%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420
|||| |||||| | | ||||| ||||| |||| || |||||| ||||| |||||
Sbjct 135380 TATTGGCCTCCACGGAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAA 135439
Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480
|| || || || || |||| || ||||||||||||||||| || | |||||||||||
Sbjct 135440 TCCGAAAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCC 135499
Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGA 46539
| || | || ||||||||| |||||| ||||| ||| | | | ||||||| ||
Sbjct 135500 GGTGGGATGCCCTCCTTGTCTTGGATCTTTGACTTGA-CGTTGTCGATCGTGTCGGATGA 135558
Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||| || | ||||| || ||||| || || || || || || ||||||||
Sbjct 135559 TTCCACTTCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAAATTTGCAT 135612
Score = 132 bits (146), Expect = 5e-26
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
|| || ||||| ||||||||||| ||||| || | || |||||||||||||| || ||
Sbjct 135650 TCTTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAA 135709
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|||| |||||||||||| | || | | |||||||||| ||||||| ||||| |
Sbjct 135710 ATCAGGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTCGACTTGACATTG 135769
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | |||||||| || || || || | |||||||| ||||| || || || || ||
Sbjct 135770 TCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACG 135829
Query 46583 AAGATTTGCAT 46593
||||| |||||
Sbjct 135830 AAGATCTGCAT 135840
Score = 122 bits (134), Expect = 1e-22
Identities = 138/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| | || |||||||| ||||| ||||||||||| || ||||| |||| |||
Sbjct 135860 ACGAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCCTCG 135919
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| ||||| |||||||| |||||||| | || | || ||||| ||| |
Sbjct 135920 AGCTGCTTGCCTGCGAAAATCAAGCGTTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGG 135979
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| |||| | | | | |||||| ||| || || || | || ||||| |||
Sbjct 135980 ATCTTGCTCTTCACATTATCGATGGTGTCGGACGACTCAACCTCGAGGGTAATGGTCTTG 136039
Query 46565 CCCGT 46569
|| ||
Sbjct 136040 CCGGT 136044
>seq2864
Length=266724
Score = 123 bits (136), Expect = 3e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| || |||||||| || ||||| | || || | |||||| || ||||| |
Sbjct 247966 CCTTCTGGATGTTATAGTCGGAGAGGGTGCGACCATCCTCCAACTGCTTTCCAGCGAAGA 248025
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| ||||||||||| | || | | |||||||||| |||||| |||||| |
Sbjct 248026 TCAAACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 248085
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||||||||| || || || | ||||||||| ||||| || || || || || |
Sbjct 248086 CGATGGTGTCGCTCGACTCGACCTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTTACGA 248145
Query 46584 AGATTTGC 46591
|| | |||
Sbjct 248146 AGCTGTGC 248153
>seq3236
Length=283868
Score = 107 bits (118), Expect = 2e-18
Identities = 86/104 (83%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456
|| |||||||| || || ||||||||||| || ||||| | || |||||||||||||||
Sbjct 201547 GTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 201488
Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
||||| ||||||||||||||||| | || | | |||||||||
Sbjct 201487 GCGAAGATCAAGCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTC 201444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565184059393320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |