Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236925.1_202017-07- 28] 7,691 sequences; 41,753,485 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq260 143 6e-29 seq3236 86.0 1e-11 >seq260 Length=339642 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||||||||| || || || |||||||| | ||| || | || || || ||||| Sbjct 135409 GTGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGAAAGTGTCCGGCCGTCCTCAAGCTG 135468 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || ||||| || || ||||| || |||||||| || || Sbjct 135469 CTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTT 135528 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||||||||| || || ||||| || ||||||||| || || | ||||| || || Sbjct 135529 TGACTTGACGTTGTCGATCGTGTCGGATGATTCCACTTCGAGTGTGATAGTCTTGCCGGT 135588 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 135589 GAGTGTCTTGACGAAAATTTGCAT 135612 Score = 114 bits (126), Expect = 3e-20 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| || ||||| || || ||||| |||| ||||| | ||||| |||||||| Sbjct 135637 GTGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCGAGCTG 135696 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| ||||| || || || || || ||||| || || || || || ||||| || || || Sbjct 135697 CTTGCCTGCAAAAATCAGGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTT 135756 Query 195057 TTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 |||||| || || ||||||| | | || || || || ||||| | ||||| || Sbjct 135757 CGACTTGACATTGTCGATGGTGTCGCTGGAC--TCGACCTCGAGGGTGATGGTCTTGCCG 135814 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||| || ||||| | ||||| Sbjct 135815 GTGAGAGTCTTGACGAAGATCTGCAT 135840 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || |||||| ||| || || || ||||| |||| || || | || || ||| Sbjct 135860 ACGAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCCTCG 135919 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| |||||||| || | ||||| ||||| || ||||||||||| || || || Sbjct 135920 AGCTGCTTGCCTGCGAAAATCAAGCGTTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGG 135979 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || |||||||| || || || || ||||||| ||||| Sbjct 135980 ATCTTGCTCTTCACATTATCGATGGTGTCGGACGACTCAACCTCGAGGGTAATGGTCTTG 136039 Query 195112 CCTGT 195116 || || Sbjct 136040 CCGGT 136044 >seq3236 Length=283868 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||| ||| || ||||| ||||| |||| || || | ||||| ||| Sbjct 201559 ACGAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 201500 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 |||||||| || |||||||| | || || ||||| || ||||| || || |||||| Sbjct 201499 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCT 201443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109372270642997