Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236925.1_202017-07- 28] 7,691 sequences; 41,753,485 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6817 176 8e-39 seq379 168 1e-36 >seq6817 Length=715036 Score = 176 bits (194), Expect = 8e-39 Identities = 560/862 (65%), Gaps = 34/862 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| | |||||||| ||||| | |||| |||||| || || |||||||||||| Sbjct 197071 ATATGGCAAATGTACAAAAAGGCCGAGGCCTCATTCTGGACAGCTGAGGAGATTGATCTG 197012 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGA-GCAGCATT-TTC-TCAAG 25593 | ||||| | ||| |||| || | | ||| ||||| | | ||| ||| || Sbjct 197011 TCGAAGGATCTCCACGACTGGAACAAGCGACTCAACGACGACGAACGATTCTTCATCTCA 196952 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | |||||||| || || || ||||| || || |||||||| || |||| | Sbjct 196951 CACGTCCTCGCATTCTTCGCCGCATCCGATGGCATTGTCAACGAGAACCTCGTCGAGCGC 196892 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | || |||||| | |||||| || |||||||| |||||||| || Sbjct 196891 TTCAGCTCTGAGGTGCAGATCCCGGAGGCACGATGCTTCTACGGCTTCCAGATCATGATG 196832 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTA--CAGACG 25768 || || | ||||| ||| ||| || ||||| || || ||||| | || | Sbjct 196831 GAGAACATCCACTCCGAGACATATTCC---CTTCTCATCGATACATACATCAGCGAGCCA 196775 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 || | || | || ||||| ||||||||| |||| || ||||| ||||||| Sbjct 196774 AAGCAGCGA-ACAT-ACCTGTTCAATGCCATCGACAACATCCCATGCATCCGCAGGAAGG 196717 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | ||||| || ||||| | ||| | | || || | | || || | | Sbjct 196716 CTGACTGGGCGTTGCGATGGATTTCTGACAAGAACTCGACATTCGCCCTCCGTCTCATCG 196657 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCA 25948 | ||||| || || ||||||||||| ||| || || ||||| || ||||||||||| | Sbjct 196656 CATTTGCCGCCGTTGAGGGCATCTTCTTCTCTGGATCTTTTGCTGCTATCTTCTGGCTGA 196597 Query 25949 AGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 || | | | || | |||| ||||||| || || |||||||||||| | | || ||| Sbjct 196596 AG-AAACGTGGTCTCATGGCCGGGCTCACATTCTCGAACGAGCTCATCTCCCGTGATGAG 196538 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT 26067 || | |||| ||| || |||||||| || | | || || || |||| || Sbjct 196537 GGCATGCACACAGACTTCGCCTGCCTTCTGTTCTCG---CATCTGAAGAACAAGCCGAAC 196481 Query 26068 CAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 || | || | || ||||| | ||||| || ||| ||| ||||||| Sbjct 196480 CAGGCCCTTGTGCAGAGCATCATTACCGAGGCCGTCACGATTGAGCAGGAGTTCTTGACA 196421 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 |||| |||||| | |||||| ||||||||||| Sbjct 196420 GACGCTCTTCCATGCAAGCTTCTGGGGATGAACGCTGGCCTCATGTCACAATACATTGAA 196361 Query 26188 TATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCG----CCAGA--CTCTACAGTACG 26241 | || ||||| | || |||| ||| ||||| | ||| |||||| ||| Sbjct 196360 TTCGTCGCCGATCGCCTACTGT------TGGCACTCGGCAACAAGAAGTTCTACA--ACG 196309 Query 26242 C--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299 | | ||||| |||||||| ||||| ||||| ||| ||| || |||||||||||||| | Sbjct 196308 CCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTGGGCGGCAAGACCAACTTCTTCG 196249 Query 26300 AAAAGAGGGTCGGCGACTATCA 26321 | ||| | || ||||| || || Sbjct 196248 AGAAGCGTGTTGGCGAGTACCA 196227 >seq379 Length=54504 Score = 168 bits (186), Expect = 1e-36 Identities = 838/1315 (64%), Gaps = 47/1315 (4%) Strand=Plus/Minus Query 221371 GTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGG-GCAGCGT 221429 ||| | |||||| |||||| | || || | |||| || || ||| | ||||| | Sbjct 5645 GTATGTCTCGTAAGGACCGAGCTTCTCAGCAAGCTCGCATGAA-GCCTCAAGAGCAGCAT 5587 Query 221430 GGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCA 221489 | |||||||||||||| ||| ||||||| ||||||||| || || ||| |||| Sbjct 5586 GATAGATGGTCTCAAAAATCTGGATGTTGAGCTCCTTGGCCTCAGGCGAGTCGAATGGCA 5527 Query 221490 TACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTC 221549 | || || | ||| | || || || || | || || | ||| ||||| | ||| | Sbjct 5526 TGCGGAGAGCCAAGAAGGCATCAGCAAGACCGTTGACACCAAGACCAATGGGTCGGTGGC 5467 Query 221550 TCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGA 221609 |||| || ||||| || || || |||||| ||||| ||||| | Sbjct 5466 GGAAGTTGCTCTTTCGTGCCTCTGGTACCGGGTAGTAGTTGATCTCGATGGTCTTGTTCA 5407 Query 221610 GGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAA---CT 221666 |||| | |||| ||||| |||||| || |||| | | || ||| || Sbjct 5406 GGTTACGTGTGACCACTTTGGTGACCTCGTGAAGTTTCTTGAAGTCAAAAACCTCGTTCT 5347 Query 221667 CGCCGCCGTCGTGGAGGGGTTCCACAA-AAGCGTTTAGGGCAACGCTGGCCAGGTTACAC 221725 || | || ||| | ||| || | ||||| || ||||| || || Sbjct 5346 CGATGTCGACGTAGGTGGG---CAGAGCAAGCG--------AA-----GCCAGATTGCAG 5303 Query 221726 ACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTG 221785 || || ||||| ||| | |||| |||||||| || || | || || |||| Sbjct 5302 ACAGCGACCTCATCCGGAGCAGAGTACTCCATGATCTCAGTGCACAAATTAGAGCTCTTG 5243 Query 221786 ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAG 221845 ||||| || || | || || || |||||| ||||| ||||||||||| || || || Sbjct 5242 ATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGAATGAAA 5183 Query 221846 GGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCAC 221904 || ||| ||||| ||| ||| | ||||| | ||| | || |||| || | || Sbjct 5182 GGTGTGCCGGTCTCGGTCTGCGCCTCGAGAATAGCATACCATATTT-TCTGAGCACGAAC 5124 Query 221905 CGTCCTCTTGACTGCACCCTCGGTCTTT-TCATACCCGGTATAGAGCATGTCAAACTTTT 221963 |||| | || || | | ||| | ||||| | || ||| | |||| | Sbjct 5123 CGTC----TCACGGCCCTTGCCTTCTCTCTCATAACGCTCGTACAGCTCCTTGAACTCGT 5068 Query 221964 CACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCA-GTGCTTG 222022 ||||||| | || ||| || || || | ||| ||||| ||| |||| |||| | Sbjct 5067 CACCGTAGACATCCGACAGACCAGGGCATTCGTTGGGGCACATTAGAGTCCAAGTGCC-G 5009 Query 222023 TTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTG 222082 || | || ||| | |||||| ||||| || || ||||| || || | || | ||| | Sbjct 5008 TTCTGTTCGACACGCTGCATAAAGAGATCGGGAATCCAGAGAGCGTAGAACAAATCGCGC 4949 Query 222083 GTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCG 222142 | || || ||| || | ||| || | || |||| |||| | | ||| ||| Sbjct 4948 GCACGAACTTCTTCCTTTCCATGGTTCTTGCGAAGGTCCATGAACTGCATGACGTCTGCG 4889 Query 222143 TGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACC 222202 ||||||||||| || |||| ||| | ||| || || ||||||||||||||||| | || | Sbjct 4888 TGCCACGGCTCAAGGTAGATGGCAAAAGCACCTGGACGCTTGTTGCCACCCTGGT-CAAC 4830 Query 222203 ATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTT 222261 | | ||| | |||| ||| || || | ||||| || ||||||||| ||||| Sbjct 4829 GTAACGTGCAGTGTTGTTGTAGACTCGTAGCATTGGTACAAGACCGTTGGATGTGCCGTT 4770 Query 222262 GGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT----ACTGGCAGACATGCCGATAC 222317 ||||| |||||| | || ||||| | ||| || | ||| || |||| Sbjct 4769 TGTGCCGCCAATGTATGAGCCTGTAGCCCTGATGTTGTGAACATGAAGA----CCAATAC 4714 Query 222318 CACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAG 222377 | || |||| || ||||||||||| || ||||||| ||||| ||| || || || Sbjct 4713 CGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGGTGTCGTAGATACCATCAATGC 4654 Query 222378 AGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGT 222437 ||| ||||| | | || || || || || | | ||| | | | || || || Sbjct 4653 TGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAGCTGCGCCTGTGGGGTACCAGCAC 4594 Query 222438 TAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTA 222497 | || || || || || ||||| ||||| | ||||| | ||| ||||| | Sbjct 4593 TGAAAAGTGTTGGCGAAGCATGTGTGAAGTACTTCAACGACATGTAGTTGTATGTCTCGA 4534 Query 222498 CGACTCTGGCGATGTTGTCCCCGTGAAT-CTGCATGGCGCATCTCATGTACATGTACTGG 222556 || | |||| ||||||||||| | | | | || | |||| ||| | || Sbjct 4533 TCGCTGCTTCAATGTCTTCCCCGTGAATGCCGACAGCCACA-CGCATGATCATCTGTTGC 4475 Query 222557 GGCCTCTCCACAGGACCCTTGGAGC--TGGAGAGCAGGTACGATTTTTCCAGAGTCTTGA 222614 || ||||| || ||| | | | | ||| ||||| ||| ||||||||||||| Sbjct 4474 GGTCTCTCGGCA--ACCTTGCCATCAATTCTGAGAAGGTATGATCGCTCCAGAGTCTTGA 4417 Query 222615 ACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTC 222669 | || ||||| | | || ||||| | | | | || | ||| | || |||||| Sbjct 4416 AGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGACAATGGCCGAGTTCAGCTC 4362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928755503183040