Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236925.1_202017-07-
28] 7,691 sequences; 41,753,485 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq260 140 3e-28
seq379 105 7e-18
>seq260
Length=339642
Score = 140 bits (154), Expect = 3e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | ||| |||| ||| | ||| || ||||| ||||| || |||||||| || |
Sbjct 135386 CCTCCACGGAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGAA 135445
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | ||| || ||||| ||||| || || || | ||||||||| || || ||
Sbjct 135446 AGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 135505
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || ||||| || ||| ||||| ||| | |||||||| ||||||||
Sbjct 135506 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATCGTGTCGGATGATTCCACT 135565
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || || || || ||||| | || || ||||||||||||||
Sbjct 135566 TCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAAATTTGCAT 135612
Score = 122 bits (134), Expect = 9e-23
Identities = 138/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
||||| || || ||| ||||| || |||||||||||| | |||| || ||| |||
Sbjct 135860 ACGAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCCTCG 135919
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| |||||||| |||||||| || ||||| || || || |||||||| || || ||
Sbjct 135920 AGCTGCTTGCCTGCGAAAATCAAGCGTTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGG 135979
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || || | ||||||||||| || || ||||| |||||||| ||
Sbjct 135980 ATCTTGCTCTTCACATTATCGATGGTGTCGGACGACTCAACCTCGAGGGTAATGGTCTTG 136039
Query 134685 CCGGT 134689
|||||
Sbjct 136040 CCGGT 136044
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||| | ||| || || ||||| || || ||||||||||||
Sbjct 135614 CCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGAC 135673
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || || || |||||||| |||||||||||||||| |||||||| || || ||
Sbjct 135674 AGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGTCAGGTGGG 135733
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || || || || ||||| ||| | |||||| || || ||
Sbjct 135734 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGCTGGACTCGACC 135793
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || ||||| || ||||| | ||| || ||||| || |||||
Sbjct 135794 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 135840
>seq379
Length=54504
Score = 105 bits (116), Expect = 7e-18
Identities = 349/533 (65%), Gaps = 21/533 (4%)
Strand=Plus/Plus
Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623
||||| ||| | |||| ||||| || ||||||||||| ||||||||||| || || |
Sbjct 4476 CAACAGATGATCATGCGTGTGGCTGTCGGCATTCACGGGGAAGACATTGAAGCAGCGATC 4535
Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTT---T 7680
|| || ||| | ||||| ||||| | || || || |||||||| || | || |
Sbjct 4536 GAGACATACAACTACATGTCGTTGAAGTACTTCACACATGCTTCGCCAACACTTTTCAGT 4595
Query 7681 GCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGAC 7740
|| | | || | ||| || | | || || || ||| | ||||| || |||
Sbjct 4596 GCTGGTACCCCACAGGCG---CAGCTAGCATCCTGCTTCTTGGTGGCCATGAAGGATGAC 4652
Query 7741 AGCATCGACGGCATTTACAACACGCTGCGCGAT-TGCGCCAATATTTCCAAATACGGCGG 7799
||||| || || || ||| |||| || | ||| || |||| || ||||| ||| ||
Sbjct 4653 AGCATTGATGGTATCTACGACACCCT-CAAGATATGTGCCATGATCTCCAAGAACGCTGG 4711
Query 7800 CGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAA 7859
||| || ||||| | || || || | | || | || ||| | ||| ||
Sbjct 4712 CGGTATTGGTCTTCATGTTCACAACATCAGGGCTACAGGCTCATACATTGGCGGCACAAA 4771
Query 7860 CGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGT 7919
||| | | ||| |||| | | || ||| | || || | ||| ||| | | || | ||
Sbjct 4772 CGGCACATCCAACGGTCTTGTACCAATGCTACGAGTCTACAACAACACTGCACGTTACGT 4831
Query 7920 AGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGC 7976
|||||||| || ||||| ||| || ||||||||| | ||||||||||||||
Sbjct 4832 TGACCAGGGTGGCAACAAGCGTCCAGGTGCTTTTGCCATCTACCTTGAGCCGTGGCACGC 4891
Query 7977 GGACATTTACGCAGTGC-TAAATCTGCGTCGCAA----CATGGGTTGCGAAGACAGCAAA 8031
||| | | ||||| | | | || |||||| ||||| | |||||
Sbjct 4892 AGAC-GTCATGCAGTTCATGGACCT---TCGCAAGAACCATGGAAAG-GAAGAAGTTCGT 4946
Query 8032 GCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084
||||||||| | |||| || | ||| | |||||||| |||||| ||| ||
Sbjct 4947 GCGCGCGATTTGTTCTACGCTCTCTGGATTCCCGATCTCTTTATGCAGCGTGT 4999
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505349812261320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |