Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236925.1_202017-07- 28] 7,691 sequences; 41,753,485 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq379 196 6e-45 seq5890 89.7 6e-13 seq2482 87.8 2e-12 >seq379 Length=54504 Score = 196 bits (216), Expect = 6e-45 Identities = 885/1385 (64%), Gaps = 31/1385 (2%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| |||||||||| || ||||| || ||| |||| ||| || | ||| || Sbjct 5852 GTAAATGTTGCTTGTGTATGGCTCGAAGCACTCGTTAAAGCCCATGATCTGCGAGGTCGA 5793 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 |||||||||||| || || | | ||| ||| || | ||| | || ||| | Sbjct 5792 GGCTGTTGGCATCGGCGCAACGAGAAGCGAGTTGCGCACACCGTGCTGGGCGATCTTGCC 5733 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCAC-CTT--CCCACATGTCAAACTG 110883 |||||| | ||||||| || || | ||| | ||| |||||||||| |||| Sbjct 5732 CTTGAGTGCGGCCCAGTCCCAG---AGGTCGGTAGGAGTCTTGCCCCACATGTCGTACTG 5676 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTC--A 110941 ||| | || || || | ||||| || | || || || | ||| | ||||| | Sbjct 5675 GAGCTCGCCCTGCGATACTGGAGAGCCTGGGTATGTCTCGTAAGGACC--GAGCTTCTCA 5618 Query 110942 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 || | || || ||||| || | || ||||| ||||| ||||| || | || Sbjct 5617 GCAAGCTCGCATGAAGCCTCAAGAGCAGCATGATAGATGGTCTCAAAAATCTGGATGTTG 5558 Query 111002 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGA 111061 | ||||||||| ||| || || |||| |||| | || |||| || ||| Sbjct 5557 AGCTCCTTGGCCTCAGGCGAGTCGAATGGCATGCGGAGAGCCAAGAAGGCATCAGCAAGA 5498 Query 111062 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-AC 111120 || | ||||| | |||||| |||| ||| || | || |||||| || ||| || Sbjct 5497 CCGTTGACACCAAGACCAATGGGTCGGTGGCGGAAGTTGCTCTTTCGTGCC-TCTGGTAC 5439 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 || || | || | || ||| ||| || || || || | || |||| || Sbjct 5438 CGGGTAGTAGTTGATCTCGATGGTCTTGTTCAGGTTACGTGTGACCACTTTGGTGACCTC 5379 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 111240 |||||||| | | |||||| |||| | ||| || | || || || | Sbjct 5378 GTGAAGTTTCTTGAAGTCAAAAACCTCGTTCTCGATGTCGACGTAGGTGGGCAGAGCAAG 5319 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 || |||| |||||| ||||| ||||||| | | | |||||| | || || || || Sbjct 5318 CGAAGCCAGATTGCAGACAGCGACCTCATCCGGAGCAGAGTACTCCATGATCTCAGTGCA 5259 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360 || || || ||||| || || || | |||||| ||||| ||||| |||| || || Sbjct 5258 CAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTC 5199 Query 111361 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAAC 111420 |||||| || ||| | || || || ||||| ||||| | | ||||||||| | ||| | Sbjct 5198 CTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTCGAGAATAGCATACCATAT 5139 Query 111421 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGC-CTCGTACTTTGTGTAGAGGG 111479 | || | || | | ||||| | ||| | | ||| || ||| || Sbjct 5138 TTTCTGAGCACGAACCGTCTCAC-GGCCCTTGCCTTCTCTCTCATAACGCTCGTACAGCT 5080 Query 111480 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGA 111538 | | ||||| ||||| | || || ||||| || || || || || || | ||| Sbjct 5079 CCTTGAACTCGTCACCGTAGACATCCGACAGACCAGG-GCATTCGTTGGGGCACATTAGA 5021 Query 111539 GACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 111598 | ||| || | || || |||| ||| || || || |||||||| || | | Sbjct 5020 GTCCAAGTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGGAATCCAGAGAGCGTAG 4961 Query 111599 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 111658 || | ||| | ||| | ||||| | || ||||| || | || | ||||| | Sbjct 4960 AACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAAGGTCCATGAACTGC 4901 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------ 111712 |||| || |||||||| |||||||| |||| || | || || | ||||| Sbjct 4900 ATGACGTCTGCGTGCCACGGCTCAAGGTAGATGGCAAAAGCACC---TGGACGCTTGTTG 4844 Query 111713 CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCA 111772 ||| | || | || || || || ||| ||| | || || |||||||| | || ||| Sbjct 4843 CCACCCTGGTCAACGTAACGTGCAGTGTTGTTGTAGACTCGTAGCATTGGTACAAGACCG 4784 Query 111773 TCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGT 111830 | ||| || ||||| || | ||| | ||| | | || || | | || | | Sbjct 4783 TTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTG--TAGCCCTGATGTTGTGAACAT 4726 Query 111831 GCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGA 111890 | | |||||||| ||||| ||| ||||| ||||| | | || || | |||| Sbjct 4725 GAAGACCAATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGGTGTCGTAGA 4666 Query 111891 TACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 111950 |||| | || ||| ||||| |||| | | |||||| | | ||||| || Sbjct 4665 TACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAGCTGCGCCTGTG 4606 Query 111951 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG-GACATCTTG 112009 | ||||||||| |||| || ||||| | || || |||| ||| | ||||| | | Sbjct 4605 GGGTACCAGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAG-TACTTCAACGACATGTAG 4547 Query 112010 TCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATG 112069 | ||||||||| | | | ||||||||||||||||| ||||||| || || |||||| Sbjct 4546 TTGTATGTCTCGATCGCTGCTTCAATGTCTTCCCCGTGAATGCCGACAGCCACACGCATG 4487 Query 112070 AACAT 112074 | ||| Sbjct 4486 ATCAT 4482 >seq5890 Length=2317 Score = 89.7 bits (98), Expect = 6e-13 Identities = 340/528 (64%), Gaps = 12/528 (2%) Strand=Plus/Plus Query 11293 TTCATTGAGAAGGTTTGCCAACTCCGCACCAGAGAATCCAGTTGTTTGCTTGGCAATACT 11352 |||||| || || ||| |||| || ||||| |||||||| || || |||| ||||| | Sbjct 1054 TTCATTCAGGAGATTTTCCAAATCTGCACCGGAGAATCCCGTAGTACGCTTCGCAATGAT 1113 Query 11353 CGCGAGACTGACATCTTCAGATAACTT-CTTGTCTCGGGCATGGACTCCCAAAATCTTCT 11411 | || | ||||||| | ||| | ||||| || | || ||| || || | | Sbjct 1114 GTCCAGCTTCACATCTTTGG-TAAGTGGCTTGTTGCGTGAGTGTACTTTCAGAACCGCTT 1172 Query 11412 TGCGACCTCGCACACTTGGAAGACCCACTTGGATCTTGCGATCAAAACGACCCGGGCGAA 11471 ||||||| ||| || || |||| || | || |||||||| || || || | Sbjct 1173 CACGACCTCTCACGTCAGGGCGATCCACCGTAATTTGACGGTCAAAACGTCCTGGACGCA 1232 Query 11472 GGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCT 11531 | | ||| || || || || | || || || || |||| | | ||| || | Sbjct 1233 GCAAGGCAGGGTCCAGAATGTCTGCACGGTTCGTAGCTGCAACGATGATAATACCT---T 1289 Query 11532 CATTGTCA---AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCAT 11588 ||||| | || |||||||| || ||| || || || | ||||||||| | || | Sbjct 1290 CATTGGCTCCGAAACCATCCATTTCAACGAGCAACTGGTTGAGTGTTTGTTCACGTTCGT 1349 Query 11589 CATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGA 11648 | | | | |||||||| || || || ||||||||||| ||||| || | Sbjct 1350 CGTGACCACCACCAAGACCAGCACCACGCTGACGTCCTACCGCATCAATTTCATCGATAA 1409 Query 11649 AGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCAC 11708 ||| |||||||| |||| || ||||||| | || || || | |||| Sbjct 1410 AGATGATACATGGGGCGTTTTTCTTCGCATTTTCAAACAAGTCACGTACACGAGATGCAC 1469 Query 11709 CCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATT 11766 | ||||| |||||||| || || |||| | | || | || || |||||| ||| Sbjct 1470 CGACACCGACAAACATTTCAACGAAGTCAGAACCGGA--AATGCTGAAGAATGGTACACC 1527 Query 11767 TGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | ||||| || | || || ||||| | ||| || || ||||| || Sbjct 1528 CGCCTCACCGGCAACAGCACGAGCGAGCAAGGTTTTACCTGTACCCGG 1575 >seq2482 Length=248254 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/208 (71%), Gaps = 10/208 (5%) Strand=Plus/Minus Query 182517 AGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAG 182576 ||||||||||||||||| ||||| | ||| ||| ||||| ||||| ||| | ||||| Sbjct 17824 AGACCCTTGATGTGAGAGCCATCGTGATCCTGATCGGTCATGATCATCAGATGGCCATAA 17765 Query 182577 CG-AAG--TTCAGAAACATCTTGGTAGTCTTTTCCTTGTTGAAGACCAAGGATCTTCTTG 182633 || ||| || || |||| |||||| || ||||| ||||| || | ||||||| Sbjct 17764 CGCAAGCCTTTAG---TATCTGTGTAGTCCTTCTTATGTTGCAGACCCAGAAACTTCTTG 17708 Query 182634 A-GATCATTGAA-CTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCT 182691 | | || |||| ||| ||| || || ||| | | ||||| || || ||||| Sbjct 17707 ATGTTC--TGAATCTCGGCGTTCCTTGAAATCTGGTCGATGGAAGCATCGCGCACATTGA 17650 Query 182692 TACATTTACCGCGAAGTGGGAACACACC 182719 | ||||| ||||||||||| ||||| Sbjct 17649 GAATCTTACCACGAAGTGGGAAGACACC 17622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627971622573600