Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236925.1_202017-07-
28] 7,691 sequences; 41,753,485 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq2313 145 2e-29
seq1909 122 3e-22
seq260 109 2e-18
seq7284 107 6e-18
>seq2313
Length=213737
Score = 145 bits (160), Expect = 2e-29
Identities = 469/726 (65%), Gaps = 3/726 (0%)
Strand=Plus/Plus
Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258
|| || || ||||| || ||||| || || ||||| || | | | | | |||||||
Sbjct 94621 GCAATTGGTATCGACTTGGGTACCACGTACTCTTGCGTGGGTATCTTCAGAGATGATCGC 94680
Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318
| || || || || || ||||| || ||| | ||||| || |||| ||| || || ||
Sbjct 94681 ATTGAGATCATCGCCAACGATCAGGGCAACCGCACAACACCCTCATTCGTCGCCTTCACA 94740
Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378
|| || |||||| |||| |||||| | || || || || | || || ||| |||
Sbjct 94741 GACACCGAGCGTCTGATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCAGCAAAC 94800
Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438
|| || || || || |||||| | || || | | || ||| | ||| |
Sbjct 94801 ACAGTCTTCGACGCAAAGCGATTGATCGGCCGCAAGTTCCAAGACGCAGAGGTGCAAGCA 94860
Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498
|| | || || || || || | || | | | ||| | || || ||| | || |
Sbjct 94861 GACATGAAGCACTTCCCCTTCAAGGTCAT-CGAGAAGGC--TGGCAAGCCAGTCATCTCG 94917
Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558
|| || | || || || | || || || ||| || || || || | ||| | |
Sbjct 94918 GTCGAGTTCAAGGGCGAGGAGAAGCAGTTCACACCAGAGGAGATCTCCGCCATGATCCTC 94977
Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618
|| ||| || | || || | || | |||| || || | | || || |
Sbjct 94978 ACAAAGATGCGTGAGACCGCAGAGTCGTACCTTGGTGGCACCGTCAACAACGCCGTCGTC 95037
Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678
|| || ||||| ||||| || || | ||||| |||||||| || || || ||||
Sbjct 95038 ACGGTTCCAGCATATTTCAACGACTCGCAGCGACAAGCAACAAAGGACGCCGGTCTCATT 95097
Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738
|| || | || || || | || || ||||| || ||||| ||||| ||||| || ||
Sbjct 95098 GCTGGCCTCAACGTCCTCCGTATCATCAATGAGCCAACTGCAGCAGCCATTGCCTACGGT 95157
Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798
|| || || | || ||| || ||| | || || || ||| | |||||||||||
Sbjct 95158 CTCGACAAGAAGACTGAGGGCGAGCGCAATGTGCTCATCTTCGATCTTGGTGGTGGTACC 95217
Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858
|| ||||| || || || ||| | || ||||| ||||| || || || | |||||||||
Sbjct 95218 TTCGATGTGTCGCTGCTCACAATCGAGGAGGGTATTTTCGAGGTCAAGTCCACTGCTGGT 95277
Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918
|| || || | ||||| || || || || || || || || || || || || |||
Sbjct 95278 GACACTCACTTGGGTGGTGAGGACTTCGACAACCGCCTTGTCAACCACTTCGTAAACGAA 95337
Query 349919 TTTAAG 349924
||||||
Sbjct 95338 TTTAAG 95343
>seq1909
Length=2575
Score = 122 bits (134), Expect = 3e-22
Identities = 214/312 (69%), Gaps = 6/312 (2%)
Strand=Plus/Minus
Query 349576 TGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTT 349635
||||||||||||| | ||| |||| |||||| | || ||||| || |||||||| || ||
Sbjct 597 TGCTGAAGCATATCTGGGTCAAACGGTAACTCAAGCAGTTATCACGGTACCAGCTTACTT 538
Query 349636 TAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCT 349695
||||| ||||||| ||||| |||||||| || | || || || | | |||||
Sbjct 537 CAATGACAGCCAGCGTCAAGCAACCAAAGATGCAGGTAAAATCGCAGGTCTGGAAGTTCT 478
Query 349696 AAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGA 349755
| || | || || || || || ||||| | ||||| || | || |||
Sbjct 477 GCGTATCGTCAACGAGCCAACAGCAGCAGCTTTGGCATACGGTATGGAGAAA------TC 424
Query 349756 CCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACT 349815
| |||| ||| ||||| | | ||| || ||||| ||||| || || ||||| | ||
Sbjct 423 CGAAGACCAAACGATTCTCGTATATGACTTGGGTGGCGGTACATTCGACGTATCCATCCT 364
Query 349816 AACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGG 349875
||| | || || | || ||||||||||| || ||||||| || || |||||
Sbjct 363 TGAACTGGGTGACGGCTTCTTCGAAGTTAAAGCGACCAGCGGTGATAACCAACTGGGTGG 304
Query 349876 AGAAGATTTTGA 349887
|| || |||||
Sbjct 303 CGATGACTTTGA 292
>seq260
Length=339642
Score = 109 bits (120), Expect = 2e-18
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || ||||| ||||| ||| || || || || || ||
Sbjct 135838 CATACCACCACGAAGACGGAGGACGAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTC 135897
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || || || || || || || || || | |||||||| |||||
Sbjct 135898 GGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGTTGCTGGTCAGG 135957
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685
||||| ||||| |||||||| || || ||| || |||||||| || | || || | |
Sbjct 135958 TGGAATGCCTTCCTTATCCTGGATCTT-GCTCTTCACATTATCGATGGTGTCGGACGACT 136016
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719
|||| || || |||| ||||| ||||| | |||
Sbjct 136017 CAACCTCGAGGGTAATGGTCTTGCCGGTGACTGT 136050
Score = 104 bits (114), Expect = 7e-17
Identities = 166/236 (70%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || | || ||||| || ||||| || || || |
Sbjct 135606 TTTGCATACCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGT 135665
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| || || || || || ||||| || || || ||||| |
Sbjct 135666 AGTCGGACAGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGT 135725
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
|||| || || || || || ||||| || || | || ||||| || || | || | ||
Sbjct 135726 CAGGTGGGATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTC-GCTG 135784
Query 140683 G-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || || || || || | ||||| ||||| || || || || || ||||||||
Sbjct 135785 GACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 135840
>seq7284
Length=231214
Score = 107 bits (118), Expect = 6e-18
Identities = 245/368 (67%), Gaps = 3/368 (1%)
Strand=Plus/Minus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
|| ||||| | ||||| ||| | | | || ||||||||| | || || |||| |
Sbjct 39228 CCAGAAGAGGTCTCATCCATGATCCTGGGCAAGATGAAGGAAGTCGCCGAGTCATACCTC 39169
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|| |||| || || | || || | || || |||||||| || || || |||||||||
Sbjct 39168 GGCGAAAAGGTCACCAACGCAGTCGTCACAGTCCCAGCCTACTTCAACGACGCCCAGCGT 39109
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
| || || || || ||||||| || || || | || || || | | | || |||
Sbjct 39108 GCCGCTACCAAGGACGCTGGCACGATCGCCGGTCTCAACGTCCTCCGTGTCGTCAACGAA 39049
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
|| || || || || | || || || || || || || ||| | ||| | ||
Sbjct 39048 CCTACCGCCGCCGCTCTCGCCTACGGCCTCGACAA---GACCGACAAGGAACGCCAGATC 38992
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831
|| | | || | |||||||||||||| ||||| || | | || | || ||||
Sbjct 38991 ATTGTCTACGACCTTGGTGGTGGTACTTTCGATGTCTCCATCTTGACTGTCGACCAGGGT 38932
Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891
| || || ||| | ||||| || ||||| || ||||||||||| || ||||| || |
Sbjct 38931 GTGTTCGAGGTTCAGGCAACGGCCGGTGACACCCATCTTGGTGGTGAGGATTTCGACCAG 38872
Query 349892 CGTCTCGT 349899
||| ||||
Sbjct 38871 CGTGTCGT 38864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515105085410873
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |