Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236925.1_202017-07- 28] 7,691 sequences; 41,753,485 total letters Query= NC_029104.1 Length=54312 Score E Sequences producing significant alignments: (Bits) Value seq6873 107 7e-19 seq1533 86.0 2e-12 >seq6873 Length=1653 Score = 107 bits (118), Expect = 7e-19 Identities = 379/589 (64%), Gaps = 5/589 (1%) Strand=Plus/Plus Query 10445 AGCAGTATCAAGCGATGGGAGCTATCCAAAATTTTGATGCTCAAAAGGACATTATTGTTT 10504 ||||| ||| | || || || || |||||||||||| | ||| || || | |||| Sbjct 543 AGCAGCTTCAGGATATCGGGGCGATTCAAAATTTTGATTCCAAAACAGATATCACTGTTG 602 Query 10505 CTCCAGGTAATGATAGTGATTCATTGCTAACTGAGGGGTATATCCAACCTGTCGATGCCA 10564 |||| || ||||| | || | || | ||| | |||||||||| ||| || Sbjct 603 CTCCGGGCAATGAAACCGACAGTATTCTGATCGAGATTCAGGTCCAACCTGTGGATTCCG 662 Query 10565 TGGAGAAAAACTACTTAAAGGCGGTGGTGCGATAA-ATGGCTTTTTTAAAATATGAAGAC 10623 | || ||| || | || | | |||| ||| ||| | ||||| ||| ||| Sbjct 663 TTGAAAAAGTATATATGAAAGTGAAGGTGGTTTAAGATGACATTTTTGAAAGCAAGCGAC 722 Query 10624 ACGATAAATGGTCAGGAAGGACGTGCCTACGCCACGATTAACGGTCGTGTAGAGGAAATG 10683 ||||| || |||||||| || || ||||| |||||||| || | || |||||| Sbjct 723 ACGATCTCCGGCCAGGAAGGCCGCGCATACGCAACGATTAATGGACAGACGGAAGAAATG 782 Query 10684 TTCTGGCTTAAAAAGTTCGAGGCAAAGGTAGAAAAGAACAAAAA--AGAAGGAAAGACAC 10741 |||| | || | | | || |||| ||| || | |||||||| ||| | || || Sbjct 783 TTCTATGTGAAGACGCTGGAAGCAACGGTGGAGA--AACAAAAAGCAGAGGTCAAAACGT 840 Query 10742 TAAACAGACGCGGTACCCAGCATAAGGCAATGGGATGGAAAGGTACAGGCAGCATGACCA 10801 | | |||||| ||||| || |||| || ||| ||| | || |||||| | Sbjct 841 TGGGTCGCCGCGGTGTACAGCACAAAGCAACCGGTTGGTCCGGTTCGGGTTCCATGACAA 900 Query 10802 TCTACTATGTGACCACCCTTTTCCGCCAACTTATGCTCGATTACATGAAGACAGGTAAAG 10861 ||| |||| || ||| |||||| | || ||||| | |||||| ||| ||| | Sbjct 901 TCTTCTATACCACTTCCCGTTTCCGTGAGCTGATGCTACAGTACATGCAGAATGGTGTGG 960 Query 10862 ACATTTACTTTGATGTTCAGATCACAAATGAAGATCCGACATCTAGTGTTGGAAAGCAAA 10921 ||| ||||| || || | | || || |||||||| | |||| |||| || || | Sbjct 961 ACACGTACTTCGACATTGAAGTGACCAACGAAGATCCTTCCTCTACGATTGGCAAACAGA 1020 Query 10922 CTGTTGTCATCAAAGGAATTAACCTTGATGGTATTACAATGGCTCTTTTGGACATAGATA 10981 | || | ||||||| | || || || || | | ||||| |||| | || Sbjct 1021 CAGTAACCCTCAAAGGTGTCAATCTGGACAGTGTAATCATGGCATCCCTGGATACCGAGG 1080 Query 10982 GTGAGGACATGGAAGAGGAGATTAGCTTCACTTGGCAAGATGCTGATAT 11030 ||||| |||| || || | ||||| || | |||||| ||||| Sbjct 1081 CTGAGGCGTTGGAGGAAGAAGTGAGCTTTACCTTTGAAGATGTCGATAT 1129 >seq1533 Length=994 Score = 86.0 bits (94), Expect = 2e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 38374 CCGTTTTTCTTTTCGAACTCATCAATATGGTGTTCGATAAGATGCTCAATTTGCATAGCG 38433 || || | |||||| || || |||||||| | || || | || ||||||||||| ||| Sbjct 38 CCTTTCTCCTTTTCAAAGTCTTCAATATGCTTCTCAATCAAATATTCAATTTGCATCGCG 97 Query 38434 ATTGATCGTTTGTTTTTATCAGCAATATATTTAATCTTTTCGAAGTTAGTTTCTTGTAAA 38493 | || ||||||||||| ||||| || |||||| || || || || |||||| || Sbjct 98 AGGGACCGTTTGTTTTTGTCAGCGATCACTTTAATTTTCTCAAAATTCGTTTCTCTTAGC 157 Query 38494 CGCAATGTAAAAGGACGTTTATCAGTAGCCAT 38525 | |||||| | |||||| |||||||| Sbjct 158 CTAGGTGTAAAGACTCTTTTATCTGTAGCCAT 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 173660937989308