Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236925.1_202017-07- 28] 7,691 sequences; 41,753,485 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6817 143 4e-29 seq379 125 1e-23 >seq6817 Length=715036 Score = 143 bits (158), Expect = 4e-29 Identities = 548/851 (64%), Gaps = 12/851 (1%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || ||||| || || ||||| |||||||| || || || ||||| ||| || || || Sbjct 196224 TTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAAATGTTC 196283 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| || || || || || || | || || | || || || | | | | | Sbjct 196284 TCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCCAACAGT 196343 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || | ||| || |||||||| || || | ||| | || ||||| || | || Sbjct 196344 AGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGCGTTCATCCCCAGAAGC 196403 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 ||| || ||||| || || | ||||| || ||||| ||||| || || | || || Sbjct 196404 TTGCATGGAAGAGCGTCTGTCAAGAACTCCTGCTCAATCGTGACGGCCTCGGTAATGAT- 196462 Query 46579 GATGTT-ACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637 | | | || ||| | || | | ||| ||| |||| | || || || Sbjct 196463 GCTCTGCACAAGGGCCTGGTTCGGCTTGTTCTTCAGATGCGAGAACAGAAGGCAGGCGAA 196522 Query 46638 ATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT 46697 || || | ||| ||||| | || | ||||| || ||||||||||| | ||| Sbjct 196523 GTCTGTGTGCATGCCCTCATCACGGGAGATGAGCTCGTTCGAGAATGTGAGCCCGGCCAT 196582 Query 46698 TAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 46757 || ||||| || || ||||| || ||||| || ||||||||||| ||||| ||||| || Sbjct 196583 GAGACCACGTTTCTTCAGCCAGAAGATAGCAGCAAAAGATCCAGAGAAGAAGATGCCCTC 196642 Query 46758 TACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCT 46814 || || || ||||||| || | || | | | | || | | ||||| | Sbjct 196643 AACGGCGGCAAATGCGATGAGACGGAGGGCGAATGTCGAGTTCTTGTCAGAAATCCATCG 196702 Query 46815 TTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 ||||| |||||||| | | || || || | || || ||||| || || | Sbjct 196703 CAACGCCCAGTCAGCCTTCCTGCGGATGCATGGGATGTTGTCGATGGCATTGAACAGGTA 196762 Query 46875 GtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATG 46934 || | | || | | |||||||| || | ||| ||| | || || || Sbjct 196763 TGTTCGCTGCTTTGGCTCGCTGATGTATGTATCGATGAGAAGGGAATATGTCTCGGAGTG 196822 Query 46935 AATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC 46994 ||||| || || ||||| || ||||| || |||| ||| || | ||||| ||||| Sbjct 196823 GATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGGGATCTGCACCTC 196882 Query 46995 TGTACAAAATCGTTCAGACAAA-TTCTCATTCACTATTCCATCACTAGCAGCAAAAAATG 47053 | | || || || ||| | ||||| || || || ||||| || || || |||| Sbjct 196883 AGAGCTGAAGCGCTC-GACGAGGTTCTCGTTGACAATGCCATCGGATGCGGCGAAGAATG 196941 Query 47054 CCAATACATGTTTAATAAAATATTTTTCATCG--GT--AGTCAGTTTATTCCAGTCATTG 47109 | | || ||| || || || ||| ||| || |||| | || |||||||| | | Sbjct 196942 CGAGGACGTGTGAGATGAAGAATCGTTCGTCGTCGTTGAGTC-GCTTGTTCCAGTCGTGG 197000 Query 47110 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATAC 47169 | ||| || || | ||| | || ||||||||||||||||| ||||| || ||||| ||| Sbjct 197001 AGATCCTTCGACAGATCAATCTCCTCAGCTGTCCAGAATGAGGCCTCGGCCTTTTTGTAC 197060 Query 47170 ATATTCCATAT 47180 || | |||||| Sbjct 197061 ATTTGCCATAT 197071 >seq379 Length=54504 Score = 125 bits (138), Expect = 1e-23 Identities = 615/977 (63%), Gaps = 30/977 (3%) Strand=Plus/Minus Query 76271 AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATC 76330 ||||| | || || ||||| || || || ||||||| | | | || | || ||| Sbjct 5326 AGAGCAAGCGAAGCCAGATTGCAGACAGCGACCTCATCCGGAGCAGAGTACTCCATGATC 5267 Query 76331 TCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTA 76390 || ||||| | |||| | |||||| || |||||||| | ||||||||||| ||| Sbjct 5266 TCAGTGCACAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTG 5207 Query 76391 CATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGAT 76450 | |||||| || |||| || || || || || || |||| | |||| ||||| Sbjct 5206 GCGGCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTCGAGAATAGCA 5147 Query 76451 TTCCAGACGACTCTAGCTTTTATTATA--GATTTGTATCGCTTC--------TCTCTTTC 76500 | ||| | |||| | | || || || | | ||||| || Sbjct 5146 TACCATA----------TTTTCTGAGCACGAACCGTCTCACGGCCCTTGCCTTCTCTCTC 5097 Query 76501 ATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTC 76560 ||| | || | | | || || || || | ||||| || |||||| ||||| Sbjct 5096 ATAACGCTCGTACAGCTCCTTGAACTCGTCACCGTAGACATCCGACAGACCAGGGCATTC 5037 Query 76561 ATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGG 76620 || || ||||| | | ||| || | | | || || | |||||||||||| || Sbjct 5036 GTTGGGGCACATTAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGG 4977 Query 76621 TATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTT 76680 ||||| ||||| || | ||| || | | | |||||| ||||| ||||| Sbjct 4976 AATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCG 4917 Query 76681 AAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACC 76740 ||| || | ||||| ||| | || | ||||| || || || || || || | | |||| Sbjct 4916 AAGGTCCATGAACTGCATGACGTCTGCGTGCCACGGCTCAAGGTAGATGGCAAAAGCACC 4857 Query 76741 CGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACAT 76800 || || || || || ||||| || | || | |||||||| || || |||| | ||| Sbjct 4856 TGGACGCTTGTTGCCACCCTGGTCAACGTAACGTGCAGTGTTGTTGTAGACTCGTAGCAT 4797 Query 76801 TGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAAT 76860 ||| | || ||||| ||||| || ||||| || ||| || || || | || Sbjct 4796 TGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTAGCCCTGAT 4737 Query 76861 ATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAA 76920 || || | || || || || || || | || ||||| | ||||| || | Sbjct 4736 GTTGTGAACATGAAGACCAATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAG 4677 Query 76921 TGTGTCATAGATGCCCTCTATACTATCATCCATCATG----TTAAGAAGAAAACAGCTAG 76976 ||||| ||||| || || || || |||||| ||||| |||||| | ||||| Sbjct 4676 GGTGTCGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAG 4617 Query 76977 ACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATT 77036 || || || || ||| | || | ||| || || ||||| ||||| | | Sbjct 4616 ----CTGCGCCTGTGGGGTACCAGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACT 4561 Query 77037 TTTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCT 77095 | || | |||| |||||||| || || ||||||| || || ||||| || Sbjct 4560 TCAACGACATGTAG-TTGTATGTCTCGATCGCTGCTTCAATGTCTTCCCCGTGAATGCCG 4502 Query 77096 ACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAAC 77155 ||||| |||||||| | ||| || || |||| || || ||| || ||| | | Sbjct 4501 ACAGCCACACGCATGATCATCTGTTGCGGTCTCTCGGCAACCTTGCCATCAATTCTGAGA 4442 Query 77156 AAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAA 77215 | ||||||| |||| ||| || || || || || | ||| ||||| | || || Sbjct 4441 AGGTATGATCGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAG 4382 Query 77216 ATAATAACCGAATTTAG 77232 | ||| |||| || || Sbjct 4381 ACAATGGCCGAGTTCAG 4365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712865860269120