Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236925.1_202017-07-
28] 7,691 sequences; 41,753,485 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq260 159 7e-34
seq3236 116 8e-21
seq2864 114 3e-20
seq6817 113 9e-20
seq535 113 9e-20
seq5194 105 1e-17
>seq260
Length=339642
Score = 159 bits (176), Expect = 7e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| |||| || | || |||||| |||||||||||||| |
Sbjct 135613 ACCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGA 135672
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || |||||||| || || || || ||||| |||| || || |||||| ||
Sbjct 135673 CAGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGTCAGGTGG 135732
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| |||||||| | || || | ||||| ||||| | |||||
Sbjct 135733 GATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGCTGGACTCGAC 135792
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | |||||| ||||| ||||||||
Sbjct 135793 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 135840
Score = 158 bits (174), Expect = 3e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || || || |||| || | ||| || || ||||||||||| || | |
Sbjct 135386 CCTCCACGGAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGAA 135445
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||| ||||| || || || ||||| ||||| | ||| || ||||| ||
Sbjct 135446 AGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 135505
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||||||||||||||||| || ||| | ||||| ||||| || | ||| |||
Sbjct 135506 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATCGTGTCGGATGATTCCACT 135565
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | ||||| ||||| || |||||
Sbjct 135566 TCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAAATTTGCAT 135612
Score = 138 bits (152), Expect = 2e-27
Identities = 155/205 (76%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || || ||||| | ||||| || || |||||||||||||| |
Sbjct 135841 ACCACCACGAAGACGGAGGACGAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGA 135900
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| || ||||| || || || || || || ||||| ||||| |||||| ||
Sbjct 135901 CAGGGTGCGACCGTCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGTTGCTGGTCAGGTGG 135960
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||| || ||||| || |||||| ||||| || || ||||||| ||||| || | || |
Sbjct 135961 AATGCCTTCCTTATCCTGGATC-TTGCTCTTCACATTATCGATGGTGTCGGACGACTCAA 136019
Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075
| ||||| || || ||||| || ||
Sbjct 136020 CCTCGAGGGTAATGGTCTTGCCGGT 136044
>seq3236
Length=283868
Score = 116 bits (128), Expect = 8e-21
Identities = 111/141 (79%), Gaps = 1/141 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| || || || || || | ||||| || || || ||||||||||| |
Sbjct 201578 ACCACCACGCAGACGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 201519
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || ||||| |||||||| || || ||||| ||
Sbjct 201518 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGG 201459
Query 282992 AATACCCTCCTTGTCT-TGGA 283011
||| |||||||||||| ||||
Sbjct 201458 AATTCCCTCCTTGTCTGTGGA 201438
>seq2864
Length=266724
Score = 114 bits (126), Expect = 3e-20
Identities = 135/180 (75%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||| ||||| | || ||||| |||||||| | || || || || ||||||
Sbjct 247968 TTCTGGATGTTATAGTCGGAGAGGGTGCGACCATCCTCCAACTGCTTTCCAGCGAAGATC 248027
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATC 283030
||||| || ||||| || || ||||||||||| |||||| ||||| || || | ||
Sbjct 248028 AAACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATC-TTGCTCTTGACATTGTC 248086
Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
||| ||||| | ||||| ||||| ||||| ||||| || || | ||||| |||||
Sbjct 248087 GATGGTGTCGCTCGACTCGACCTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTTACGAA 248146
>seq6817
Length=715036
Score = 113 bits (124), Expect = 9e-20
Identities = 157/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGG 230250
|||||||| | |||||| |||| ||| ||| | || ||||| |||| ||||||
Sbjct 196434 AGGAGTTCTTGACAGACGCTCTTCCATGCAAGCTTCTGGGGATGAACGCTGGCCTCATGT 196375
Query 230251 GGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGT 230310
||||| || |||||||| || ||||| | | |||| || || || |||| | |
Sbjct 196374 CACAATACATTGAATTCGTCGCCGATCGCCTACTGTTGGCACTCGGCAACAAGAAGTTCT 196315
Query 230311 ATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACT 230370
| ||| ||| |||||||||| || |||||| |||||| || || || || ||||
Sbjct 196314 ACAACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTGGGCGGCAAGACCAACT 196255
Query 230371 TCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410
||||||| |||||||| |||| || || | | | |||||
Sbjct 196254 TCTTCGAGAAGCGTGTTGGCGAGTACCAGAAGGCTGGTGT 196215
>seq535
Length=1393
Score = 113 bits (124), Expect = 9e-20
Identities = 341/513 (66%), Gaps = 18/513 (4%)
Strand=Plus/Minus
Query 301402 CGATGCTTAAAGATAGCGATGCTTAAAATGGACCCCTATATCAACGTCGATCCGGGGACG 301461
||| | || ||| || | || | ||| | || || || ||||| |||| ||||| ||
Sbjct 1112 CGAGGGTTGAAGGTAACCATTCAAAAATTTGATCCATACATCAATATCGACCCGGGAACA 1053
Query 301462 ATGAGCCCGACTCAACATGGAGAAGTGTTCGTGACGGATGATGGTGCTGAAACCGATCTG 301521
||||| || ||| ||||| || ||||| || ||||||||||| || ||||| |||||
Sbjct 1052 ATGAGTCCTTATCAGCATGGTGAGGTGTTTGTAACGGATGATGGCGCGGAAACGGATCTT 993
Query 301522 GATCTGGGGCACTACGAACGTTTCACT-TCATTAACC-CTTAAGCGTGAAAGTAATTTTA 301579
|| || || |||||||||||||| | | ||| |||| || | | || || | |
Sbjct 992 GACCTTGGCCACTACGAACGTTTTATTGACATCAACCTCTCCA--AAAACAGCAACGTCA 935
Query 301580 CGACTGGCCAAGTTTATTTAAAAGTTATCGAAAATGAAC-GCGAAGGTAGCTATCTCGGA 301638
||||||| |||| || | || ||| || || | ||| || | ||||| ||
Sbjct 934 CGACTGGTAAAGTATACTCCTCCGTCATCAGCAAAGAGCGGCGCGGGGA-ATATCTGGGC 876
Query 301639 AAGACGGTGCAAGTTGTTCCCCACATCACCGATGAAATCAAA-AG-AAGAATT---CACA 301693
||||| ||||| |||| |||||||| | || |||||| || | ||| | ||
Sbjct 875 GGAACGGTACAAGTCATTCCACACATCACGAACGAGATCAAAGAGCGTGTATTCCGCGCA 816
Query 301694 TTGCGGCTGAA---AAATCAGATATACTTATTGGAGAAATTGGAGGAACGGTCGGAGATA 301750
|| |||| || ||| | ||||| || ||||| || ||||| || || |
Sbjct 815 GGACG--TGAAGCGGGTTCGGATGTCGTTATTACGGAGATTGGCGGTACGGTGGGTGACA 758
Query 301751 TCGAATCGCTT-CCTTTTATAGAAGCGATTCGTCAACTCTCTCATGACGAAGGAACGGCC 301809
||||| |||| ||||| | ||||| ||||||||| || ||| | ||| | |
Sbjct 757 TCGAA-AGCTTGCCTTTCCTGGAAGCTATTCGTCAAATCAAGAGTGATGTAGGTCGTGAC 699
Query 301810 AATGTTCTGTTCATTCATCTCGTGCTCTTACCCTATATAGCGACTGCTGGTGAGTTGAAA 301869
|| || ||| ||| ||| | || | || || || | |||||||||| |||||
Sbjct 698 AACGTCATGTACATCCATGTAACACTTATCCCTTACATCAAGGCTGCTGGTGAAGTGAAA 639
Query 301870 TCAAAGCCAGCACAGCATTCGGTTAAAGAATTG 301902
| || ||| | ||||| || || ||||||
Sbjct 638 ACCAAACCAACTCAGCACAGTGTGAAGGAATTG 606
>seq5194
Length=209227
Score = 105 bits (116), Expect = 1e-17
Identities = 250/377 (66%), Gaps = 3/377 (1%)
Strand=Plus/Minus
Query 312486 CGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATCG 312545
|| |||||| | | | | ||||| || || |||||| |||| || | || ||| |||
Sbjct 46971 CGTCCCCACATCAAAGCCTTGACGATCGAAGCGAAGTTGTCGTCCATCAAAATGATGTCG 46912
Query 312546 GCTGCTTCCTTTGCAATGTCTGTAC---CACTCCCCATTGCACACCCGACGTCTGCTTCC 312602
| ||||||||||| | ||||||| || | ||| ||| ||||||| || || ||
Sbjct 46911 GAGGCTTCCTTTGCGACTTCTGTACCAGCAATGTTCATGGCAAACCCGACATCAGCAGCC 46852
Query 312603 TTAAGAGCCGGGGCGTCGTTAGCACCATCGCCACTCGATGCGACGACGTGGCCAAGGGCC 312662
|| || || || |||||||| | |||||| ||| | ||||| | ||| | |
Sbjct 46851 TTTAGGGCAGGAGCGTCGTTGGTACCATCTCCAGTGACAGCGACAGTCTCGCCCATCTCT 46792
Query 312663 TTCATGAGCTGAACCAACTTATACTTATCCTCTGGGGATGAACGGGCAAGAACTTTCAGC 312722
|||| | ||| ||||| | | ||| || || || || || || || ||||| | |||
Sbjct 46791 TTCAGGCGCTTGACCAAGGTCTTCTTGTCGTCGGGAGAAGATCGCGCGAGAACCTGCAGT 46732
Query 312723 TTAGGTGCGATGGCAACCTGTTCATCGTTACTCATTGCCCGGAATTCCTTACCTTCAATG 312782
|| || ||| || ||| ||| || ||||| ||||||||| ||||| |
Sbjct 46731 TTTGGAATGATAGCCTTCTGCTCAGTCTTGCTCATCTTGCGGAATTCCGGTCCTTCGAGT 46672
Query 312783 GCGATATCCCCGTGCTTCAGCATACCGATTTCACTGGCAATGTGCTTCGCCGTCTGGATG 312842
|| | | | || | || | || || || | ||||| ||| |||||| | |||
Sbjct 46671 GCAACACCACCTGGGTTGAAGATGCCACACTCGGTAGCAATAGCCTTTGCCGTCAGAATG 46612
Query 312843 TTATCACCGGTAACCAT 312859
|| || || ||||||||
Sbjct 46611 TTGTCTCCAGTAACCAT 46595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046636053337914
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |