Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236925.1_202017-07- 28] 7,691 sequences; 41,753,485 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq260 159 7e-34 seq3236 116 8e-21 seq2864 114 3e-20 seq6817 113 9e-20 seq535 113 9e-20 seq5194 105 1e-17 >seq260 Length=339642 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| || | || |||||| |||||||||||||| | Sbjct 135613 ACCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGA 135672 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || |||||||| || || || || ||||| |||| || || |||||| || Sbjct 135673 CAGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGTCAGGTGG 135732 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || || | ||||| ||||| | ||||| Sbjct 135733 GATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGCTGGACTCGAC 135792 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 135793 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 135840 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || |||| || | ||| || || ||||||||||| || | | Sbjct 135386 CCTCCACGGAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGAA 135445 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || ||||| ||||| | ||| || ||||| || Sbjct 135446 AGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 135505 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||||| || ||| | ||||| ||||| || | ||| ||| Sbjct 135506 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATCGTGTCGGATGATTCCACT 135565 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 135566 TCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAAATTTGCAT 135612 Score = 138 bits (152), Expect = 2e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| | ||||| || || |||||||||||||| | Sbjct 135841 ACCACCACGAAGACGGAGGACGAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGA 135900 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || ||||| || || || || || || ||||| ||||| |||||| || Sbjct 135901 CAGGGTGCGACCGTCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGTTGCTGGTCAGGTGG 135960 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| || ||||| || |||||| ||||| || || ||||||| ||||| || | || | Sbjct 135961 AATGCCTTCCTTATCCTGGATC-TTGCTCTTCACATTATCGATGGTGTCGGACGACTCAA 136019 Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075 | ||||| || || ||||| || || Sbjct 136020 CCTCGAGGGTAATGGTCTTGCCGGT 136044 >seq3236 Length=283868 Score = 116 bits (128), Expect = 8e-21 Identities = 111/141 (79%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || || || | ||||| || || || ||||||||||| | Sbjct 201578 ACCACCACGCAGACGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 201519 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || ||||| |||||||| || || ||||| || Sbjct 201518 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGG 201459 Query 282992 AATACCCTCCTTGTCT-TGGA 283011 ||| |||||||||||| |||| Sbjct 201458 AATTCCCTCCTTGTCTGTGGA 201438 >seq2864 Length=266724 Score = 114 bits (126), Expect = 3e-20 Identities = 135/180 (75%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||| ||||| | || ||||| |||||||| | || || || || |||||| Sbjct 247968 TTCTGGATGTTATAGTCGGAGAGGGTGCGACCATCCTCCAACTGCTTTCCAGCGAAGATC 248027 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATC 283030 ||||| || ||||| || || ||||||||||| |||||| ||||| || || | || Sbjct 248028 AAACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATC-TTGCTCTTGACATTGTC 248086 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 ||| ||||| | ||||| ||||| ||||| ||||| || || | ||||| ||||| Sbjct 248087 GATGGTGTCGCTCGACTCGACCTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTTACGAA 248146 >seq6817 Length=715036 Score = 113 bits (124), Expect = 9e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGG 230250 |||||||| | |||||| |||| ||| ||| | || ||||| |||| |||||| Sbjct 196434 AGGAGTTCTTGACAGACGCTCTTCCATGCAAGCTTCTGGGGATGAACGCTGGCCTCATGT 196375 Query 230251 GGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGT 230310 ||||| || |||||||| || ||||| | | |||| || || || |||| | | Sbjct 196374 CACAATACATTGAATTCGTCGCCGATCGCCTACTGTTGGCACTCGGCAACAAGAAGTTCT 196315 Query 230311 ATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACT 230370 | ||| ||| |||||||||| || |||||| |||||| || || || || |||| Sbjct 196314 ACAACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTGGGCGGCAAGACCAACT 196255 Query 230371 TCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 ||||||| |||||||| |||| || || | | | ||||| Sbjct 196254 TCTTCGAGAAGCGTGTTGGCGAGTACCAGAAGGCTGGTGT 196215 >seq535 Length=1393 Score = 113 bits (124), Expect = 9e-20 Identities = 341/513 (66%), Gaps = 18/513 (4%) Strand=Plus/Minus Query 301402 CGATGCTTAAAGATAGCGATGCTTAAAATGGACCCCTATATCAACGTCGATCCGGGGACG 301461 ||| | || ||| || | || | ||| | || || || ||||| |||| ||||| || Sbjct 1112 CGAGGGTTGAAGGTAACCATTCAAAAATTTGATCCATACATCAATATCGACCCGGGAACA 1053 Query 301462 ATGAGCCCGACTCAACATGGAGAAGTGTTCGTGACGGATGATGGTGCTGAAACCGATCTG 301521 ||||| || ||| ||||| || ||||| || ||||||||||| || ||||| ||||| Sbjct 1052 ATGAGTCCTTATCAGCATGGTGAGGTGTTTGTAACGGATGATGGCGCGGAAACGGATCTT 993 Query 301522 GATCTGGGGCACTACGAACGTTTCACT-TCATTAACC-CTTAAGCGTGAAAGTAATTTTA 301579 || || || |||||||||||||| | | ||| |||| || | | || || | | Sbjct 992 GACCTTGGCCACTACGAACGTTTTATTGACATCAACCTCTCCA--AAAACAGCAACGTCA 935 Query 301580 CGACTGGCCAAGTTTATTTAAAAGTTATCGAAAATGAAC-GCGAAGGTAGCTATCTCGGA 301638 ||||||| |||| || | || ||| || || | ||| || | ||||| || Sbjct 934 CGACTGGTAAAGTATACTCCTCCGTCATCAGCAAAGAGCGGCGCGGGGA-ATATCTGGGC 876 Query 301639 AAGACGGTGCAAGTTGTTCCCCACATCACCGATGAAATCAAA-AG-AAGAATT---CACA 301693 ||||| ||||| |||| |||||||| | || |||||| || | ||| | || Sbjct 875 GGAACGGTACAAGTCATTCCACACATCACGAACGAGATCAAAGAGCGTGTATTCCGCGCA 816 Query 301694 TTGCGGCTGAA---AAATCAGATATACTTATTGGAGAAATTGGAGGAACGGTCGGAGATA 301750 || |||| || ||| | ||||| || ||||| || ||||| || || | Sbjct 815 GGACG--TGAAGCGGGTTCGGATGTCGTTATTACGGAGATTGGCGGTACGGTGGGTGACA 758 Query 301751 TCGAATCGCTT-CCTTTTATAGAAGCGATTCGTCAACTCTCTCATGACGAAGGAACGGCC 301809 ||||| |||| ||||| | ||||| ||||||||| || ||| | ||| | | Sbjct 757 TCGAA-AGCTTGCCTTTCCTGGAAGCTATTCGTCAAATCAAGAGTGATGTAGGTCGTGAC 699 Query 301810 AATGTTCTGTTCATTCATCTCGTGCTCTTACCCTATATAGCGACTGCTGGTGAGTTGAAA 301869 || || ||| ||| ||| | || | || || || | |||||||||| ||||| Sbjct 698 AACGTCATGTACATCCATGTAACACTTATCCCTTACATCAAGGCTGCTGGTGAAGTGAAA 639 Query 301870 TCAAAGCCAGCACAGCATTCGGTTAAAGAATTG 301902 | || ||| | ||||| || || |||||| Sbjct 638 ACCAAACCAACTCAGCACAGTGTGAAGGAATTG 606 >seq5194 Length=209227 Score = 105 bits (116), Expect = 1e-17 Identities = 250/377 (66%), Gaps = 3/377 (1%) Strand=Plus/Minus Query 312486 CGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATCG 312545 || |||||| | | | | ||||| || || |||||| |||| || | || ||| ||| Sbjct 46971 CGTCCCCACATCAAAGCCTTGACGATCGAAGCGAAGTTGTCGTCCATCAAAATGATGTCG 46912 Query 312546 GCTGCTTCCTTTGCAATGTCTGTAC---CACTCCCCATTGCACACCCGACGTCTGCTTCC 312602 | ||||||||||| | ||||||| || | ||| ||| ||||||| || || || Sbjct 46911 GAGGCTTCCTTTGCGACTTCTGTACCAGCAATGTTCATGGCAAACCCGACATCAGCAGCC 46852 Query 312603 TTAAGAGCCGGGGCGTCGTTAGCACCATCGCCACTCGATGCGACGACGTGGCCAAGGGCC 312662 || || || || |||||||| | |||||| ||| | ||||| | ||| | | Sbjct 46851 TTTAGGGCAGGAGCGTCGTTGGTACCATCTCCAGTGACAGCGACAGTCTCGCCCATCTCT 46792 Query 312663 TTCATGAGCTGAACCAACTTATACTTATCCTCTGGGGATGAACGGGCAAGAACTTTCAGC 312722 |||| | ||| ||||| | | ||| || || || || || || || ||||| | ||| Sbjct 46791 TTCAGGCGCTTGACCAAGGTCTTCTTGTCGTCGGGAGAAGATCGCGCGAGAACCTGCAGT 46732 Query 312723 TTAGGTGCGATGGCAACCTGTTCATCGTTACTCATTGCCCGGAATTCCTTACCTTCAATG 312782 || || ||| || ||| ||| || ||||| ||||||||| ||||| | Sbjct 46731 TTTGGAATGATAGCCTTCTGCTCAGTCTTGCTCATCTTGCGGAATTCCGGTCCTTCGAGT 46672 Query 312783 GCGATATCCCCGTGCTTCAGCATACCGATTTCACTGGCAATGTGCTTCGCCGTCTGGATG 312842 || | | | || | || | || || || | ||||| ||| |||||| | ||| Sbjct 46671 GCAACACCACCTGGGTTGAAGATGCCACACTCGGTAGCAATAGCCTTTGCCGTCAGAATG 46612 Query 312843 TTATCACCGGTAACCAT 312859 || || || |||||||| Sbjct 46611 TTGTCTCCAGTAACCAT 46595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046636053337914