Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drechmeria_20coniospora_20[genbank_20GCA_5F001618945.1_202016-04-12] 75 sequences; 31,888,966 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5 122 1e-22 seq11 113 5e-20 >seq5 Length=10013798 Score = 122 bits (134), Expect = 1e-22 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| || | ||| | ||||||||||| || || ||||| || || || || || Sbjct 3224871 CGCAGTACAAGATGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTACGGCCG 3224812 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||||||||||| ||| | || ||||||| Sbjct 3224811 TCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 3224752 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| | || | | ||| | | | ||||| ||||||||| || | |||||| Sbjct 3224751 TCC-TGAATCTTGCTCTTTACGTTGTCGATTGTGTCCGACGATTCCACCTCCAACGTGAT 3224693 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || | |||||| || ||||| ||||| Sbjct 3224692 CGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 3224657 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| ||||| |||| || |||||||| || || || Sbjct 3224620 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 3224561 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| || |||||||| | ||| | || |||||||||| ||| || || | | Sbjct 3224560 GATGAGGCGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACATT 3224501 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| ||| ||||| |||| |||||||| || || || |||||||| || Sbjct 3224500 ATCGATTGTGTCCGACGACTCCACCTCGAGGGTGATGGTCTTTCCAGTGAGCGTCTTGAC 3224441 Query 43172 AAAGATTTGCAT 43183 |||||||||||| Sbjct 3224440 AAAGATTTGCAT 3224429 Score = 100 bits (110), Expect = 3e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| | || ||||| | || || |||||||| || ||||| Sbjct 3224100 CTCCTTCTGGATGTTGTAATCGGACAAGGTCCGGCCATCCTCGAGCTGCTTGCCGGCGAA 3224041 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| || | || |||||||||| ||| || |||| | Sbjct 3224040 AATCAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATT 3223981 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | | |||||| ||| || || || | ||||||||| |||||||| Sbjct 3223980 GTCGATCGTGTCCGACGACTCGACCTCAAGCGTGATGGTCTTGCCCGT 3223933 >seq11 Length=1832425 Score = 113 bits (124), Expect = 5e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||| ||||||||||| || || ||||| || ||| || || | Sbjct 1806820 CGCAGCACGAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 1806761 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| ||||| ||||| ||||||| || | || ||||||| Sbjct 1806760 TCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTG 1806701 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || |||| ||| | | | |||||| || ||||| || | ||||| Sbjct 1806700 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 1806642 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || ||||| || ||||| || || || ||||| || Sbjct 1806641 CGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1806603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817063921000