Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drechmeria_20coniospora_20[genbank_20GCA_5F001618945.1_202016-04-12] 75 sequences; 31,888,966 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 161 3e-34 seq1 109 2e-18 >seq2 Length=5461500 Score = 161 bits (178), Expect = 3e-34 Identities = 693/1079 (64%), Gaps = 21/1079 (2%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || ||||| || || || || ||| |||| ||||| || | |||||| || || || Sbjct 3943435 GACATCATTGCCAACGACCAGGGCAACCGAACGACGCCCTCGTTCGTTGCCTTCACTGAC 3943494 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || ||||| ||||||||||| | || || || || | || || || | || || Sbjct 3943495 ACGGAGCGCCTGATTGGTGATGCCGCCAAGAACCAGGTGGCCATGAACCCTCACAACACT 3943554 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT--TTCTGACAAA-TCTACACAATC 349437 || ||||| || |||||| | ||||| | ||||| | || | | || ||| | Sbjct 3943555 GTCTTTGACGCCAAGCGATTGATTGGCCGCAAGTTCAGTGATGCCGAGGTC----CAAGC 3943610 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497 || | || || || || || | | | || | ||| |||| || || || || || Sbjct 3943611 CGACATGAAGCACTTCCCCTTCAA-GATCATCGACAAG--GGTGGCAAGCCCATAATCGA 3943667 Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 ||| || | || || || || || || ||||| || || || || ||||| | Sbjct 3943668 GGTCGAGTTCAAGGGCGAGCAGAAGACGTTCACTCCCGAGGAGATCTCCTCCATGGTCCT 3943727 Query 349558 AGTTAAAATGAAGGAAATTGCTGA-AGCATATTTAGG-TGAAACAGTAACTGATGCTGTT 349615 || ||| || | ||| || ||| || | || || | ||| || | ||||| Sbjct 3943728 CACCAAGATGCGTGAGACTGCCGAGAGC-TACCTCGGCTGCCA-AGTGACCAACGCTGTC 3943785 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 | || || || ||||| || || || ||||||| || || || || || || | Sbjct 3943786 GTCACCGTTCCTGCCTACTTCAACGACAGCCAGCGTCAGGCCACCAAGGACGCCGGTCTC 3943845 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 ||||| || | || || || |||| || || || || || ||||| || ||||| ||| Sbjct 3943846 ATTGCCGGTCTCAACGTCCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCCTAT 3943905 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || || || || | | || || || | || ||||| ||| | ||||||||| Sbjct 3943906 GGTCTCGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTCATTTTCGATCTCGGTGGTGGT 3943965 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || |||||||| || || || || | || ||||| || || || || || | |||||| Sbjct 3943966 ACCTTTGATGTCTCTCTCCTTACCATCGAGGAGGGCATCTTCGAGGTCAAGTCGACTGCT 3944025 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || | || || || || || || || || || || || || || || Sbjct 3944026 GGTGACACTCACTTGGGCGGTGAGGACTTCGACAACCGCCTGGTGAACCACTTCGTCAAT 3944085 Query 349916 GAATTTAAGCGTCAAGC-TAAAATTGA--TATTGGAGATAATCCTAGAGCAATGCGTCGC 349972 || || ||||| ||||| || | || | | | | || | || |||| || Sbjct 3944086 GAGTTCAAGCG-CAAGCACAAGAAGGACCTGTCTACCAACAGCC--GTGCCCTGCGACGT 3944142 Query 349973 CTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATT 350032 || |||| || || || || || |||||| | | || || || |||| || || || Sbjct 3944143 CTCCGAACCGCTTGCGAGCGCGCCAAGCGTACTCTGTCTTCCTCTGCCCAGACGTCGATC 3944202 Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092 ||||| || ||||| ||| |||| ||||||| | || || || || ||||| || Sbjct 3944203 GAAATCGACTCTCTGTTTGAGGGCATCGATTTCTACACCTCCATCACCCGCGCTCGTTTC 3944262 Query 350093 GAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAA 350152 || || | || |||||| || | | || || | ||||| || || | | Sbjct 3944263 GAGGAGCTCTGCCAGGATCTGTTCCGCTCCACCATCCAGCCTGTCGACCGCGTCCTGACC 3944322 Query 350153 GATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGT 350212 || || || || ||| | ||| || | || | || | || ||||| || || ||| Sbjct 3944323 GACGCCAAGGTGGACAAGAGCCAGGTTCACGAGATCGTCCTTGTCGGTGGCTCCACTCGT 3944382 Query 350213 ATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCA 350272 || || ||| || || | | | || | || || ||||| || || | || Sbjct 3944383 ATCCCCCGAGTGCAGAAGCTCATCACCGACTACTTCAACGGCAAGGAGCCCAACAAGTCG 3944442 Query 350273 ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGG 350331 || || || || || |||||||| || ||||| || || ||||| ||||| | ||||| Sbjct 3944443 ATCAACCCTGACGAGGCTGTTGCCTACGGTGCCGCCGTCCAGGCTGCTATTCTCTCTGG 3944501 >seq1 Length=2797149 Score = 109 bits (120), Expect = 2e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || || || || |||||||| || || || ||||||||||| Sbjct 1553029 TTCTGGATGTTGTAGTCCGACAAAGTCCGTCCATCTTCGAGCTGCTTACCAGCAAAGATC 1553088 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | | ||||||||| || ||||| || || || ||||| || || | || ||||| || Sbjct 1553089 AATCTTTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1553148 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | ||||| | || |||||||| |||| ||||| || ||||| || || || ||| Sbjct 1553149 ATAGTGTCAGAAGACTCGACTTCAAGCGTAATCGTCTTGCCCGTTAGGGTCTTCACGAAA 1553208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252943935225