Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drechmeria_20coniospora_20[genbank_20GCA_5F001618945.1_202016-04-12] 75 sequences; 31,888,966 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 1e-12 seq2 87.8 1e-12 >seq5 Length=10013798 Score = 87.8 bits (96), Expect = 1e-12 Identities = 131/180 (73%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 52730 CGTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT- 52788 |||||||||| | | || | ||| | ||| |||| |||||||||||||| ||| Sbjct 5547983 CGTCAAGGTGCGCGTTCGGACGACCAAGATCCCGCAGATCGGCGACAAGTTTGCCTCGCG 5548042 Query 52789 TCACGGCGCAAAAGGGGACGTGCGGAGCCGTCCTGACC--CAGGAGGACATGCCCTTCGA 52846 |||||| ||| ||||| || ||| | | | | ||| |||||||||||||||||| Sbjct 5548043 TCACGG-GCAGAAGGGCACCATCGGCGT-GACGT-ACCGGCAGGAGGACATGCCCTTCAC 5548099 Query 52847 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 52906 ||| || || ||||||| ||||||||||||| ||||| |||| || | ||||| Sbjct 5548100 GCGGGAGGGCGTCACGCCCGACATCATCATCAACCCTCACGCGATTCCGTCGCGAATGAC 5548159 >seq2 Length=5461500 Score = 87.8 bits (96), Expect = 1e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 29882 TCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTG-GACAAACTCTCCCGGTTC 29940 ||||| | |||||| ||||| || ||||| |||| | ||| | | ||| || || | Sbjct 4321890 TCCACATGATCCAGATAGACATGCGCGTCACCCATGACGTGCGTGAGGCTC-CCGGGGAC 4321832 Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 || || ||| |||| | ||||| |||||||| ||||| ||||||||||| ||||| Sbjct 4321831 GAGGTCGCAGACACGAGCAAGCATGTGGGTGAGGAGTGAGTAACTGGCGATGTTGAAGGG 4321772 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 || ||||| |||||||| | || | || || ||||| || Sbjct 4321771 AACTCCGAGGCCCATGTCGCAAGATCGTTGATACAGCTGGCA 4321730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310028606900