Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5240 140 3e-28 >seq5240 Length=8030 Score = 140 bits (154), Expect = 3e-28 Identities = 318/470 (68%), Gaps = 14/470 (3%) Strand=Plus/Plus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || || |||| || || || ||||| ||||| ||||| || | | ||||||| | ||| Sbjct 3936 TGATAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTACCAGCCAAAGATATACTTTCC 3995 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATT--TTAGAGTACCCCAGTTCGGCGATTA 16793 ||||||||||| ||||| || | | || | || || || || | ||| | Sbjct 3996 ATGAAATCAAAGGGATTGGTCAC--ATTGTAGTGCTTCTTGTTTCCAAGGGCAACGAGGA 4053 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAA-TTCGCAGTTCATTCCTATAAGA 16852 ||||| || || || || || ||||| ||||| | |||| |||||||||| | ||| Sbjct 4054 GCCTATCAGCAACGAACTCGATGTATTGACACATCAGCTTCG-AGTTCATTCCGAGCAGA 4112 Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 || ||||| || || || || || |||||| || |||| || || | |||||| Sbjct 4113 GAAACTGGAAGGGCCTCGGTTAAGAACTCTTGCTCAATTGCAACAGCGTCAGTGATAATA 4172 Query 16913 -CTAGCAA---CTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGC 16968 || | | ||| || || || ||||| ||||| |||| |||| || || || Sbjct 4173 TCTTGGATGACCTCCTTGCTGGGGCGGTG---GTTTA-GATGGGAGAACAAGAGGCAGGC 4228 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 || ||| || | |||||||| | || || || || || |||||||| ||||| Sbjct 4229 AAAGTCGGTGTGCAGGCCCTCGTCACGCGAAATCAGCTCATTTGAGAATGTCAATCCGGG 4288 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 |||| || || ||||| ||||| || || | || || || || || || || ||||| Sbjct 4289 CATCAAGCCGCGCTTCTTCAACCAGAAGATGGAAGCAAATGAACCTGAGAAAAAGATACC 4348 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138 |||||||| || || || | | ||||| ||| | |||| || |||| Sbjct 4349 CTCGACGGCAGCGAAGGCCACCAGTCGTTGGGCAAAAGTCGACTCCTTGT 4398 Score = 82.4 bits (90), Expect = 8e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || |||||||| | ||| | || ||||| ||||| ||||| |||||| Sbjct 4556 ATGTAGGTGTCGATGAGCAACGAGTATGTCTCTGAGTGGATGTTTTCCATCATGATCTGA 4615 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 ||||| || ||||| || ||||| | || || || || || ||| || || | || Sbjct 4616 AATCCATAGAAGCAACGAGCTTCAGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGG 4675 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA 17393 || ||||| |||||||| || |||||| || ||||||| Sbjct 4676 TTCTCGTTGACGATGCCATCTGACGCGGCAAAGAACGCCA 4715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517489510995600