Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq5240 141 1e-28
>seq5240
Length=8030
Score = 141 bits (156), Expect = 1e-28
Identities = 339/507 (67%), Gaps = 17/507 (3%)
Strand=Plus/Plus
Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903
|| || || || || ||||| || ||||| || || |||||||| | || |||||| ||
Sbjct 3933 TTCTGATAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTACCAGCCAAAGATATACTT 3992
Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTT-TTAAATCCCAATTCAGAAAT 23962
||||||||||| | |||||||| ||||| ||| | ||| || ||| | || |
Sbjct 3993 TCCATGAAATCAAAGGGATTGGTCACATTGTAG-TGCTTCTTGTTTCCAAGGGCAACGAG 4051
Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022
| ||||| || || ||||| || ||| ||||| | | |||||||| | ||
Sbjct 4052 GAGCCTATCAGCAACGAACTCGATGTATTGACACATCAGCTTCGAGTTCATTCCGAGCAG 4111
Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082
||||||||| ||| | || | || ||||| ||||| | || ||||| || |||||
Sbjct 4112 AGAAACTGGAAGGGCCTCGGTTAAGAACTCTTGCTCAATTGCAACAGCGTCAGTGATAAT 4171
Query 24083 AGATCTT------ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACA 24136
||||| || || | |||||| | || ||| |||| | ||
Sbjct 4172 --ATCTTGGATGACCTCCTTGCTGGGGCGGTGGTT----TAGATGGGAGAACAAGAGGCA 4225
Query 24137 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 24196
|| || ||| ||| || |||||||| | ||| | || || || || || | |||
Sbjct 4226 GGCAAAGTCGGTGTGCAGGCCCTCGTCACGCGAAATCAGCTCATTTGAGAATGTCAATCC 4285
Query 24197 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 24256
|||||| | ||| ||||| || | ||| || ||||| |||||||| || || || || ||
Sbjct 4286 GGGCATCAAGCCGCGCTTCTTCAACCAGAAGATGGAAGCAAATGAACCTGAGAAAAAGAT 4345
Query 24257 TCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA-CCGGCGC--TGTCATGTAT 24313
|| || || || || ||||| | |||| || || || || | | |||| || ||
Sbjct 4346 ACCCTCGACGGCAGCGAAGGCCACCAGTCGTTGGGCAAAAGTCGACTCCTTGTCCTGGAT 4405
Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTT 24340
||| | |||||||| ||||||||
Sbjct 4406 CCAATGAATGGCCCAATCAGCCTTCTT 4432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593657255421600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |