Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5240 141 1e-28 >seq5240 Length=8030 Score = 141 bits (156), Expect = 1e-28 Identities = 339/507 (67%), Gaps = 17/507 (3%) Strand=Plus/Plus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 || || || || || ||||| || ||||| || || |||||||| | || |||||| || Sbjct 3933 TTCTGATAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTACCAGCCAAAGATATACTT 3992 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTT-TTAAATCCCAATTCAGAAAT 23962 ||||||||||| | |||||||| ||||| ||| | ||| || ||| | || | Sbjct 3993 TCCATGAAATCAAAGGGATTGGTCACATTGTAG-TGCTTCTTGTTTCCAAGGGCAACGAG 4051 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 | ||||| || || ||||| || ||| ||||| | | |||||||| | || Sbjct 4052 GAGCCTATCAGCAACGAACTCGATGTATTGACACATCAGCTTCGAGTTCATTCCGAGCAG 4111 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 ||||||||| ||| | || | || ||||| ||||| | || ||||| || ||||| Sbjct 4112 AGAAACTGGAAGGGCCTCGGTTAAGAACTCTTGCTCAATTGCAACAGCGTCAGTGATAAT 4171 Query 24083 AGATCTT------ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACA 24136 ||||| || || | |||||| | || ||| |||| | || Sbjct 4172 --ATCTTGGATGACCTCCTTGCTGGGGCGGTGGTT----TAGATGGGAGAACAAGAGGCA 4225 Query 24137 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 24196 || || ||| ||| || |||||||| | ||| | || || || || || | ||| Sbjct 4226 GGCAAAGTCGGTGTGCAGGCCCTCGTCACGCGAAATCAGCTCATTTGAGAATGTCAATCC 4285 Query 24197 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 24256 |||||| | ||| ||||| || | ||| || ||||| |||||||| || || || || || Sbjct 4286 GGGCATCAAGCCGCGCTTCTTCAACCAGAAGATGGAAGCAAATGAACCTGAGAAAAAGAT 4345 Query 24257 TCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA-CCGGCGC--TGTCATGTAT 24313 || || || || || ||||| | |||| || || || || | | |||| || || Sbjct 4346 ACCCTCGACGGCAGCGAAGGCCACCAGTCGTTGGGCAAAAGTCGACTCCTTGTCCTGGAT 4405 Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTT 24340 ||| | |||||||| |||||||| Sbjct 4406 CCAATGAATGGCCCAATCAGCCTTCTT 4432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593657255421600