Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq5240 161 1e-34
seq6412 89.7 5e-13
>seq5240
Length=8030
Score = 161 bits (178), Expect = 1e-34
Identities = 267/383 (70%), Gaps = 2/383 (1%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
||||||| || ||||| | | |||||| | || ||| | | || | | | || |
Sbjct 4431 AGAAGGCTGATTGGGCCATTCATTGGATCCAGGACAAGGAGTCGACTTTTGCCCAACGAC 4372
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
||||||||||||| ||||||||||| |||| || || || || || |||| || |
Sbjct 4371 TGGTGGCCTTCGCTGCCGTCGAGGGTATCTTTTTCTCAGGTTCATTTGCTTCCATCTTCT 4312
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|| | ||||| |||||| | |||||||| |||| ||| || ||||| || || | |
Sbjct 4311 GGTTGAAGAAGCGCGGCTTGATGCCCGGATTGACATTCTCAAATGAGCTGATTTCGCGTG 4252
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
||||||| ||||| |||||||||||| | ||||| ||| | || || || |
Sbjct 4251 ACGAGGGCCTGCACACCGACTTTGCCTGCCTCTTGTTCTCCCATCTAAACCACCGCCCCA 4192
Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
|| || | | || || || |||| ||||| || || || ||||| ||| | |
Sbjct 4191 GCAAGGAGGTCATCCAAGATATTATCACTGACGCTGTTGCAATTGAGCAAGAGTTCTTAA 4132
Query 117282 CCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATC 117340
|||| || || || || |||||| ||| | || | |||| | ||||| |||||||||
Sbjct 4131 CCGAGGCCCTTCCAGTTTCTCTGCTCGGAATGAACT-CGAAGCTGATGTGTCAATACATC 4073
Query 117341 GAGTTCGTCGCCGACAGGCTGCT 117363
|||||||| || || ||||| ||
Sbjct 4072 GAGTTCGTTGCTGATAGGCTCCT 4050
Score = 132 bits (146), Expect = 5e-26
Identities = 199/282 (71%), Gaps = 3/282 (1%)
Strand=Plus/Minus
Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698
|||| |||||||| || ||||| ||||| |||||||| | || ||| | || || |||
Sbjct 4839 TGGCAAATGTACAAGAAAGCCGAAGCGTCATTCTGGACGGCTGAAGAGATTGATCTATCC 4780
Query 116699 AAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755
|| || | |||||| | ||| | ||| | | ||||| | ||||| |
Sbjct 4779 AAAGATCTGCAAGACTGGAACAACCGCCTCAACAATGATGAGCGGTACTTCATTTCCCGT 4720
Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815
|| ||||| || || ||||| || ||||||||||||||||| ||||||||||| |||
Sbjct 4719 GTCCTGGCGTTCTTTGCCGCGTCAGATGGCATCGTCAACGAGAACCTGGTCGAGCGCTTC 4660
Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875
||||| ||| | | || || || |||||||| || ||||||||| |||||
Sbjct 4659 AGCGGCGAGGTCCAGATCCCTGAAGCTCGTTGCTTCTATGGATTTCAGATCATGATGGAA 4600
Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
||| | ||||| || | || ||| ||||||||||| |||
Sbjct 4599 AACATCCACTCAGAGACATACTCGTTGCTCATCGACACCTAC 4558
>seq6412
Length=17604
Score = 89.7 bits (98), Expect = 5e-13
Identities = 133/186 (72%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAAGGA 40772
||||| || ||||||||| | || ||||| | | ||||| | || |||| | |||
Sbjct 17146 ACGGGAAAGACCATCACCCTAGAGGTCGAGTCGAGCGACACGATTGATAACGTTAAAGCT 17087
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|| | ||| ||||| |||||||||||| | ||||| || || | || | || |||||
Sbjct 17086 AAGA-TTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGGTTGATATTTGCTGGCAA 17028
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| ||||| || | || || | || |||||||| ||||||||| |||| ||||
Sbjct 17027 GCAACTGGAGGATGGCCGGACGTTATCTGATTACAACATACAGAAGGAGTCCACTTTGCA 16968
Query 40893 TCTAGT 40898
||| ||
Sbjct 16967 TCTCGT 16962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515163363119200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |