Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5240 161 1e-34 seq6412 89.7 5e-13 >seq5240 Length=8030 Score = 161 bits (178), Expect = 1e-34 Identities = 267/383 (70%), Gaps = 2/383 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 ||||||| || ||||| | | |||||| | || ||| | | || | | | || | Sbjct 4431 AGAAGGCTGATTGGGCCATTCATTGGATCCAGGACAAGGAGTCGACTTTTGCCCAACGAC 4372 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 ||||||||||||| ||||||||||| |||| || || || || || |||| || | Sbjct 4371 TGGTGGCCTTCGCTGCCGTCGAGGGTATCTTTTTCTCAGGTTCATTTGCTTCCATCTTCT 4312 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 || | ||||| |||||| | |||||||| |||| ||| || ||||| || || | | Sbjct 4311 GGTTGAAGAAGCGCGGCTTGATGCCCGGATTGACATTCTCAAATGAGCTGATTTCGCGTG 4252 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 ||||||| ||||| |||||||||||| | ||||| ||| | || || || | Sbjct 4251 ACGAGGGCCTGCACACCGACTTTGCCTGCCTCTTGTTCTCCCATCTAAACCACCGCCCCA 4192 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || || | | || || || |||| ||||| || || || ||||| ||| | | Sbjct 4191 GCAAGGAGGTCATCCAAGATATTATCACTGACGCTGTTGCAATTGAGCAAGAGTTCTTAA 4132 Query 117282 CCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATC 117340 |||| || || || || |||||| ||| | || | |||| | ||||| ||||||||| Sbjct 4131 CCGAGGCCCTTCCAGTTTCTCTGCTCGGAATGAACT-CGAAGCTGATGTGTCAATACATC 4073 Query 117341 GAGTTCGTCGCCGACAGGCTGCT 117363 |||||||| || || ||||| || Sbjct 4072 GAGTTCGTTGCTGATAGGCTCCT 4050 Score = 132 bits (146), Expect = 5e-26 Identities = 199/282 (71%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| |||||||| || ||||| ||||| |||||||| | || ||| | || || ||| Sbjct 4839 TGGCAAATGTACAAGAAAGCCGAAGCGTCATTCTGGACGGCTGAAGAGATTGATCTATCC 4780 Query 116699 AAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 || || | |||||| | ||| | ||| | | ||||| | ||||| | Sbjct 4779 AAAGATCTGCAAGACTGGAACAACCGCCTCAACAATGATGAGCGGTACTTCATTTCCCGT 4720 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || ||||| || || ||||| || ||||||||||||||||| ||||||||||| ||| Sbjct 4719 GTCCTGGCGTTCTTTGCCGCGTCAGATGGCATCGTCAACGAGAACCTGGTCGAGCGCTTC 4660 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 ||||| ||| | | || || || |||||||| || ||||||||| ||||| Sbjct 4659 AGCGGCGAGGTCCAGATCCCTGAAGCTCGTTGCTTCTATGGATTTCAGATCATGATGGAA 4600 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||| | ||||| || | || ||| ||||||||||| ||| Sbjct 4599 AACATCCACTCAGAGACATACTCGTTGCTCATCGACACCTAC 4558 >seq6412 Length=17604 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAAGGA 40772 ||||| || ||||||||| | || ||||| | | ||||| | || |||| | ||| Sbjct 17146 ACGGGAAAGACCATCACCCTAGAGGTCGAGTCGAGCGACACGATTGATAACGTTAAAGCT 17087 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || | ||| ||||| |||||||||||| | ||||| || || | || | || ||||| Sbjct 17086 AAGA-TTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGGTTGATATTTGCTGGCAA 17028 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || ||||| || | || || | || |||||||| ||||||||| |||| |||| Sbjct 17027 GCAACTGGAGGATGGCCGGACGTTATCTGATTACAACATACAGAAGGAGTCCACTTTGCA 16968 Query 40893 TCTAGT 40898 ||| || Sbjct 16967 TCTCGT 16962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515163363119200