Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq6412 107 3e-18 >seq6412 Length=17604 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| ||||| || || || || || |||| | || | Sbjct 16714 ATGCAAATTTTCGTCAAGACCCTAACTGGGAAGACGATTACGCTAGAAGTCGAGTCGTCA 16655 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || |||| | || ||||| |||||||| || ||||| || || || || Sbjct 16654 GACACGATCGATAATGTCAAGTCAAAAATCCAAGATAAGGAGGGTATCCCCCCCGACCAG 16595 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| || | || || || || || ||| |||| ||| | |||| ||| ||||||||| Sbjct 16594 CAACGGTTGATCTTCGCTGGGAAGCAACTAGAAGATGGCAGAACGTTATCTGATTATAAT 16535 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || ||||||||||| ||||||||| | || | ||| | || ||||| Sbjct 16534 ATCCAAAAAGAATCGACTTTGCATCTCGTCCTTCGTCTCCGTGGTGG 16488 Score = 102 bits (112), Expect = 1e-16 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| ||||| || || || || || |||| |||| || Sbjct 16943 AATGCAAATTTTCGTCAAGACCCTAACTGGGAAGACGATTACGCTAGAAGTTGAGTCATC 16884 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || |||| | ||| || || || ||||| || || || || || || || Sbjct 16883 AGATACGATCGATAATGTCAAATCAAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCA 16824 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || | || ||||| || |||||| | ||||| | || || | |||||||| Sbjct 16823 GCAACGGTTGATCTTTGCTGGGAAACAACTGGAGGACGGCCGGACGCTGTCTGATTATAA 16764 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||| || ||||| || ||||||||| | || | ||| | || ||||| || ||| || Sbjct 16763 TATCCAGAAAGAGTCTACTTTGCATCTCGTCCTTCGTCTCCGTGGTGGGATGCAAATTT 16705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755374127456000