Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq5240 156 5e-33
>seq5240
Length=8030
Score = 156 bits (172), Expect = 5e-33
Identities = 336/500 (67%), Gaps = 3/500 (1%)
Strand=Plus/Plus
Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350
|| || || || || ||||| || ||||| || || ||||| || |||| |||||| ||
Sbjct 3933 TTCTGATAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTACCAGCCAAAGATATACTT 3992
Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410
|||||||||||||| |||||||| |||||||| || || ||| | || |
Sbjct 3993 TCCATGAAATCAAAGGGATTGGTCACATTGTAGTGCTTCTTGTTTCCAAGGGCAACGAGG 4052
Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470
| ||||| || ||||| || || ||| ||||| | | |||||||| | ||
Sbjct 4053 AGCCTATCAGCAACGAACTCGATGTATTGACACATCAGCTTCGAGTTCATTCCGAGCAGA 4112
Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530
||||||||| ||| | || | || ||||| ||||| | || || | || ||||||
Sbjct 4113 GAAACTGGAAGGGCCTCGGTTAAGAACTCTTGCTCAATTGCAACAGCGTCAGTGATAATA 4172
Query 33531 AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAA 33590
| | | || | || || | || || ||| |||| | || || ||
Sbjct 4173 TCTTGGATGACCTCCTTGCTGGGGCGGTGGTTTAGATGGGAGAACAAGAGGCAGGCAAAG 4232
Query 33591 TCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATT 33650
||| |||||| |||||||| | ||| | || || || || || | |||||||||
Sbjct 4233 TCGGTGTGCAGGCCCTCGTCACGCGAAATCAGCTCATTTGAGAATGTCAATCCGGGCATC 4292
Query 33651 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCT 33710
| ||| ||||| || | ||| || |||||||| ||||| || || || ||||| || ||
Sbjct 4293 AAGCCGCGCTTCTTCAACCAGAAGATGGAAGCAAATGAACCTGAGAAAAAGATACCCTCG 4352
Query 33711 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA-CCGGCGC--TGTCATGTATCCACTTT 33767
|| ||||| ||||| | |||| | || || || | | |||| || ||||| |
Sbjct 4353 ACGGCAGCGAAGGCCACCAGTCGTTGGGCAAAAGTCGACTCCTTGTCCTGGATCCAATGA 4412
Query 33768 TGAGCCCAATCGGCCTTCTT 33787
|||||||| ||||||||
Sbjct 4413 ATGGCCCAATCAGCCTTCTT 4432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629749343517600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |