Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5240 156 6e-33 >seq5240 Length=8030 Score = 156 bits (172), Expect = 6e-33 Identities = 335/500 (67%), Gaps = 3/500 (1%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || || || || || ||||| || ||||| || || ||||| || |||| |||||| || Sbjct 3933 TTCTGATAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTACCAGCCAAAGATATACTT 3992 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 |||||||||||||| |||||||| ||||| || || || ||| | || | Sbjct 3993 TCCATGAAATCAAAGGGATTGGTCACATTGTAGTGCTTCTTGTTTCCAAGGGCAACGAGG 4052 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 | ||||| || || || || || ||| ||||| | | |||||||| | || Sbjct 4053 AGCCTATCAGCAACGAACTCGATGTATTGACACATCAGCTTCGAGTTCATTCCGAGCAGA 4112 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 ||||||||| ||| | || | || ||||| ||||| | || || || || |||||| Sbjct 4113 GAAACTGGAAGGGCCTCGGTTAAGAACTCTTGCTCAATTGCAACAGCGTCAGTGATAATA 4172 Query 49909 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 49968 | | | || | || || | || || ||| |||| | || || || Sbjct 4173 TCTTGGATGACCTCCTTGCTGGGGCGGTGGTTTAGATGGGAGAACAAGAGGCAGGCAAAG 4232 Query 49969 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 50028 ||| |||||| |||||||| | ||| || || || || || || | ||||||||| Sbjct 4233 TCGGTGTGCAGGCCCTCGTCACGCGAAATCAGCTCATTTGAGAATGTCAATCCGGGCATC 4292 Query 50029 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCT 50088 | ||| ||||| || | ||| || ||||| |||||||| || || || ||||| || || Sbjct 4293 AAGCCGCGCTTCTTCAACCAGAAGATGGAAGCAAATGAACCTGAGAAAAAGATACCCTCG 4352 Query 50089 ACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACTTT 50145 || || || ||||| || |||| | || || | | | |||| || ||||| | Sbjct 4353 ACGGCAGCGAAGGCCACCAGTCGTTGGGCAAAAGTCGACTCCTTGTCCTGGATCCAATGA 4412 Query 50146 TGAGCCCAATCGGCCTTCTT 50165 |||||||| |||||||| Sbjct 4413 ATGGCCCAATCAGCCTTCTT 4432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718190957618800