Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5240 174 2e-38 >seq5240 Length=8030 Score = 174 bits (192), Expect = 2e-38 Identities = 351/518 (68%), Gaps = 27/518 (5%) Strand=Plus/Minus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || ||||| |||||| | |||| |||| |||||| | ||| | |||| | | ||| Sbjct 4438 ATCCGTAAGAAGGCTGATTGGGCCATTCATTGGATCCAGGACAAGGAGTCGACTTTTGCC 4379 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | |||||||||| ||||| ||||| ||||| ||||| || || ||| ||||| || Sbjct 4378 CAACGACTGGTGGCCTTCGCTGCCGTCGAGGGTATCTTTTTCTCAGGTTCATTTGCTTCC 4319 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| ||| | ||||||||||| | ||||||||| |||| | || ||| | || Sbjct 4318 ATCTTCTGGTTGAAGAAGCGCGGCTTGATGCCCGGATTGACATTCTCAAATGAGCTGATT 4259 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCG 125599 || || ||||||||||| ||| ||||||||| || |||| || || ||| Sbjct 4258 TCGCGTGACGAGGGCCTGCACACCGACTTTGCCTGCCTCTTGTTCTCCCATCTA------ 4205 Query 125600 TCCCGAGTGCAGATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAG 125656 | | | ||||| | | |||||||| | ||| | || || || || Sbjct 4204 ----AACCACCGCCCCAGCAAGG---AGGTCATCCAAGATATTATCACTGACGCTGTTGC 4152 Query 125657 GATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAA 125716 || || |||||||| ||||||| |||| || || || | || ||||||| || Sbjct 4151 AATTGAGCAAGAGTTCTTAACCGAGGCCCTTCCAGTTTCTCTGCTCGGAATGAACTCGAA 4092 Query 125717 GCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC 125774 ||| ||||| | ||||| ||||| || || ||| | || || |||| |||| Sbjct 4091 GCTGATGTGTCAATACATCGAGTTCGTTGCTGATAGGCTCCT-----CGTTGCCCTTGGA 4037 Query 125775 CGCAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831 ||||| ||||| | | |||||||||||||||||| || ||||| | | Sbjct 4036 AACAAGAAGCACTACAATGTGACCAATCCCTTTGATTTCATGGAAAGTATATCTTTGGCT 3977 Query 125832 GGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 ||||| |||||||| ||||||||| ||| |||| || Sbjct 3976 GGTAAAACCAACTTCTTCGAGAAGCGTGTCGGCGACTA 3939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740978887709200