Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq5240 174 2e-38
>seq5240
Length=8030
Score = 174 bits (192), Expect = 2e-38
Identities = 351/518 (68%), Gaps = 27/518 (5%)
Strand=Plus/Minus
Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420
|| ||||| |||||| | |||| |||| |||||| | ||| | |||| | | |||
Sbjct 4438 ATCCGTAAGAAGGCTGATTGGGCCATTCATTGGATCCAGGACAAGGAGTCGACTTTTGCC 4379
Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480
| |||||||||| ||||| ||||| ||||| ||||| || || ||| ||||| ||
Sbjct 4378 CAACGACTGGTGGCCTTCGCTGCCGTCGAGGGTATCTTTTTCTCAGGTTCATTTGCTTCC 4319
Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540
||||| ||| | ||||||||||| | ||||||||| |||| | || ||| | ||
Sbjct 4318 ATCTTCTGGTTGAAGAAGCGCGGCTTGATGCCCGGATTGACATTCTCAAATGAGCTGATT 4259
Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCG 125599
|| || ||||||||||| ||| ||||||||| || |||| || || |||
Sbjct 4258 TCGCGTGACGAGGGCCTGCACACCGACTTTGCCTGCCTCTTGTTCTCCCATCTA------ 4205
Query 125600 TCCCGAGTGCAGATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAG 125656
| | | ||||| | | |||||||| | ||| | || || || ||
Sbjct 4204 ----AACCACCGCCCCAGCAAGG---AGGTCATCCAAGATATTATCACTGACGCTGTTGC 4152
Query 125657 GATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAA 125716
|| || |||||||| ||||||| |||| || || || | || ||||||| ||
Sbjct 4151 AATTGAGCAAGAGTTCTTAACCGAGGCCCTTCCAGTTTCTCTGCTCGGAATGAACTCGAA 4092
Query 125717 GCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC 125774
||| ||||| | ||||| ||||| || || ||| | || || |||| ||||
Sbjct 4091 GCTGATGTGTCAATACATCGAGTTCGTTGCTGATAGGCTCCT-----CGTTGCCCTTGGA 4037
Query 125775 CGCAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831
||||| ||||| | | |||||||||||||||||| || ||||| | |
Sbjct 4036 AACAAGAAGCACTACAATGTGACCAATCCCTTTGATTTCATGGAAAGTATATCTTTGGCT 3977
Query 125832 GGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869
||||| |||||||| ||||||||| ||| |||| ||
Sbjct 3976 GGTAAAACCAACTTCTTCGAGAAGCGTGTCGGCGACTA 3939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740978887709200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |