Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq6412 89.7 3e-13 >seq6412 Length=17604 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 |||||| || |||||||| || ||||| |||||||||| | | ||| |||| ||| Sbjct 16739 ATGCAAAGTAGACTCTTTCTGGATATTATAATCAGACAGCGTCCGGCCGTCCTCCAGTTG 16798 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGC 33285 || ||| ||| || || ||||||||||| | ||| ||||| || || || ||| Sbjct 16799 TTTCCCAGCAAAGATCAACCGTTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTT 16858 Query 33286 CTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGT 33345 ||| || | | ||||| || | | ||| || || || ||||| || || || Sbjct 16859 TGATTTGACATTATCGATCGTATCTGATGACTCAACTTCTAGCGTAATCGTCTTCCCAGT 16918 Query 33346 AAGAGTTTTTACGAAAATTTGCAT 33369 || || || |||||||||||||| Sbjct 16919 TAGGGTCTTGACGAAAATTTGCAT 16942 Score = 82.4 bits (90), Expect = 5e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 |||||| || ||||| || ||||| ||||||||||| || | | || |||| ||| Sbjct 16967 ATGCAAAGTGGACTCCTTCTGTATGTTGTAATCAGATAACGTCCGGCCATCCTCCAGTTG 17026 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGC 33285 ||| ||| |||||| || || || ||||| | ||| ||||| || || || |||| Sbjct 17027 CTTGCCAGCAAATATCAACCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTT 17086 Query 33286 CTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGT 33345 ||| || | | |||||||||| | | | || || || || || || |||||||| Sbjct 17087 AGCTTTAACGTTATCAATCGTGTCGCTCGACTCGACCTCTAGGGTGATGGTCTTTCCCGT 17146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318743916165660