Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq3205 129 1e-24
seq6412 127 5e-24
seq2898 102 2e-16
>seq3205
Length=38634
Score = 129 bits (142), Expect = 1e-24
Identities = 136/179 (76%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431
||||||||||| ||||| || || | |||||| || ||||| ||||| || ||||||
Sbjct 37386 TTCTGAATATTGTAGTCGTTCAGTGTCCGACCGTCCTCGAGTTGCTTTCCGGCGAAAATT 37445
Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491
| | ||||||||| || || || || || |||||||||||||| | || ||||| ||
Sbjct 37446 AAACGCTGTTGATCGGGTGGAATCCCCTCCTTATCCTGAATCTTCGACTTCACATTGTCG 37505
Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550
| || ||||| | |||||||| || ||||| |||||||| || || || || || ||
Sbjct 37506 ATTGTGTCGCTCGACTCTACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 37564
>seq6412
Length=17604
Score = 127 bits (140), Expect = 5e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| || || |||||||| || |||||||| ||||||| ||||| || ||
Sbjct 16502 AAGGACGAGATGCAAAGTCGATTCTTTTTGGATATTATAATCAGATAACGTTCTGCCATC 16561
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||||||||| || ||||| || || | || || || || || || || || || |||||
Sbjct 16562 TTCTAGTTGCTTCCCAGCGAAGATCAACCGTTGCTGGTCGGGGGGGATACCCTCCTTATC 16621
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|| || |||| || ||||| || | || || | || || ||||| ||||| ||
Sbjct 16622 TTGGATTTTTGACTTGACATTATCGATCGTGTCTGACGACTCGACTTCTAGCGTAATCGT 16681
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| ||||| || || || || || || |||||
Sbjct 16682 CTTCCCAGTTAGGGTCTTGACGAAAATTTGCAT 16714
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | || | || || ||||| || || || || ||||| || || || |||
Sbjct 16941 ATTCCGCCACGGAGACGGAGGACGAGATGCAAAGTGGACTCCTTCTGTATGTTGTAATCA 17000
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||| || | || || || ||||| || |||||||| || | || |||||| |||||
Sbjct 17001 GATAACGTCCGGCCATCCTCCAGTTGCTTGCCAGCAAATATCAACCGCTGTTGGTCAGGG 17060
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || || || ||||||||||| ||||| || || || | || ||||| | ||
Sbjct 17061 GGGATGCCCTCCTTGTCCTGAATCTTAGCTTTAACGTTATCAATCGTGTCGCTCGACTCG 17120
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535
|||||||| || || ||||| || ||
Sbjct 17121 ACCTCTAGGGTGATGGTCTTTCCCGT 17146
>seq2898
Length=12391
Score = 102 bits (112), Expect = 2e-16
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 104378 ATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTC 104437
|||||||||||||| | ||||| || || |||| |||||| |||||||| || || | |
Sbjct 9290 ATATTATAGTCAGAAAATGTTCTGCCATCCTCTAATTGTTTGCCAGCAAATATGAGGCGC 9231
Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497
|| || ||||| ||||| ||||| | ||||| | || | || | || |||||||||
Sbjct 9230 TGATGTTCAGGGGGTATGCCTTCCCTGTCCTGGACTTTAGACTTCAACTTATCTACGGTA 9171
Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556
|| || || | || | || ||||| || || |||| |||||||| || | |||
Sbjct 9170 TCTGATGGGTCGAAGTCAATAGTGATAGTGTTGCCCGTAATCGTTTTTACGAAAACCTG 9112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151270497628360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |