Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq7882 143 4e-30 seq4688 113 7e-21 >seq7882 Length=1382 Score = 143 bits (158), Expect = 4e-30 Identities = 192/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||| | | |||||| ||||| || ||||| || ||||| || ||||| Sbjct 332 GCTAAACGTCATCGTAAAGTTCTTCGTGATAATATTCAAGGTATTACCAAACCCGCTATA 273 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | | || ||||||||||| || || ||| | || || ||| |||| ||||| | | Sbjct 272 AGAAGATTAGCCCGTCGTGGTGGTGTTAAACGTATTTCAGGTTTGATCTACGAAGAAACT 213 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||||||||| | ||| | | | || || ||||| | ||||| || Sbjct 212 CGTGGCGTTTTGAAGGTGTTCTTGGAAAATGTAATAAGGGATGCCGTAACTTATACTGAA 153 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | || || || ||| | ||||| | || ||||| |||||||||||||| Sbjct 152 CACGCCAAAAGGAAAACCGTTACCGCTATGGACGTGGTTTATGCCTTGAAACGTCAAGGA 93 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| ||||| Sbjct 92 CGTACTCTGTACGGTTTTGGGGGTTAA 66 >seq4688 Length=19631 Score = 113 bits (124), Expect = 7e-21 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| ||| | || ||||||| || ||||||||| ||||| Sbjct 7567 TGATCTACGAAGAGACCCGTGGTGTACTCAAATCCTTCCTCGAGTCCGTTATCCGTGATG 7508 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| || |||||||| || || ||||||||||| ||| | ||| | ||||||| Sbjct 7507 CCGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACTTCCCTCGATGTTGTCTATG 7448 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | | || || |||||||||| | | || ||||| || Sbjct 7447 CCCTCAAGCGCCAAGGCCGTACGCTGTACGGTTTCGG 7411 Score = 100 bits (110), Expect = 4e-17 Identities = 83/99 (84%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||||| ||||| | || |||||||| || || || || ||||| || || Sbjct 7742 GCCAAGCGTCATCGCAAGATCT-TGCGTGATAACATTCAGGGCATTACGAAGCCTGCCAT 7684 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 |||||||||||||| |||||||| ||||||||| |||| Sbjct 7683 TCGTCGTCTGGCTCGCCGTGGTGGTGTCAAGCGTATCTC 7645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067272958310