Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5240 161 1e-34 >seq5240 Length=8030 Score = 161 bits (178), Expect = 1e-34 Identities = 337/500 (67%), Gaps = 3/500 (1%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || || || || || ||||| || ||||| || || ||||| || |||| |||||| || Sbjct 3933 TTCTGATAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTACCAGCCAAAGATATACTT 3992 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 |||||||||||||| |||||||| ||||| || || || ||| | || | Sbjct 3993 TCCATGAAATCAAAGGGATTGGTCACATTGTAGTGCTTCTTGTTTCCAAGGGCAACGAGG 4052 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 | ||||| || ||||| || || ||| ||||| | | |||||||| | || Sbjct 4053 AGCCTATCAGCAACGAACTCGATGTATTGACACATCAGCTTCGAGTTCATTCCGAGCAGA 4112 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 ||||||||| ||| | || | || ||||| ||||| | || || || || |||||| Sbjct 4113 GAAACTGGAAGGGCCTCGGTTAAGAACTCTTGCTCAATTGCAACAGCGTCAGTGATAATA 4172 Query 33253 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 33312 | | | || | || || | || || ||| |||| | || || || Sbjct 4173 TCTTGGATGACCTCCTTGCTGGGGCGGTGGTTTAGATGGGAGAACAAGAGGCAGGCAAAG 4232 Query 33313 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 33372 ||| |||||| |||||||| | ||| || || || || || || | ||||||||| Sbjct 4233 TCGGTGTGCAGGCCCTCGTCACGCGAAATCAGCTCATTTGAGAATGTCAATCCGGGCATC 4292 Query 33373 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCT 33432 | ||| ||||| || | ||| || |||||||| ||||| || || || ||||| || || Sbjct 4293 AAGCCGCGCTTCTTCAACCAGAAGATGGAAGCAAATGAACCTGAGAAAAAGATACCCTCG 4352 Query 33433 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA-CCGGCGC--TGTCATGTATCCACTTT 33489 || ||||| ||||| | |||| | || || || | | |||| || ||||| | Sbjct 4353 ACGGCAGCGAAGGCCACCAGTCGTTGGGCAAAAGTCGACTCCTTGTCCTGGATCCAATGA 4412 Query 33490 TGAGCCCAATCGGCCTTCTT 33509 |||||||| |||||||| Sbjct 4413 ATGGCCCAATCAGCCTTCTT 4432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622879688097200