Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq5240 113 4e-20
seq4403 89.7 5e-13
>seq5240
Length=8030
Score = 113 bits (124), Expect = 4e-20
Identities = 342/522 (66%), Gaps = 21/522 (4%)
Strand=Plus/Minus
Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCG---CG 46143
|| ||| | || ||||| | || ||||| || | |||||| ||| | || | ||
Sbjct 4444 CCCTGCATCCGTAAGAAGGCTGATTGGGCCATTCATTGGATC--CAGGA-CAAGGAGTCG 4388
Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203
||||| ||| | || |||||||||| || || ||||| ||||||| || ||
Sbjct 4387 ACTTTTGCCCAACGACTGGTGGCCTTCGCTGCCGTCGAGGGTATCTTTTTCTCAGGTTCA 4328
Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263
||||| ||||||| | | || | ||| | |||||||| |||| || ||
Sbjct 4327 TTTGCTTCCATCTTCTGGTTGAAGAAGCGCGGCTTGATGCCCGGATTGACATTCTCAAAT 4268
Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACT 46323
|||||||| ||||| |||||||||||||| || |||||||| || |||| | ||
Sbjct 4267 GAGCTGATTTCGCGTGACGAGGGCCTGCACACCGACTTTGCCTGCCTCTTGT-----TCT 4213
Query 46324 CGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGC------ATGTTCAAGGAGGCG 46377
| | | | || | | || ||| || | | | | | || ||| || ||
Sbjct 4212 CCCAT-CTAAACCACC--GC-CCCAGCAAGGAGGTCATCCAAGATATTATCACTGACGCT 4157
Query 46378 GTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC 46437
|| || |||||| | ||||| || || | || || || | | | ||||| || ||||||
Sbjct 4156 GTTGCAATTGAGCAAGAGTTCTTAACCGAGGCCCTTCCAGTTTCTCTGCTCGGAATGAAC 4097
Query 46438 GCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCAC 46497
| || ||||| | ||||||||||| || || || | || ||||| |||
Sbjct 4096 TCGAAGCTGATGTGTCAATACATCGAGTTCGTTGCTGATAGGCTCCTCGTTGCCCTTGGA 4037
Query 46498 CAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAG 46557
| |||||| | | | | |||||| ||||| || ||| | | || || |||
Sbjct 4036 AACAAGAAGCACTACAATGTGACCAATCCCTTTGATTTCATGGAAAGTATATCTTTGGCT 3977
Query 46558 GGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTATAAG 46599
|| ||||| || || ||||| ||||| |||||||| ||| ||
Sbjct 3976 GGTAAAACCAACTTCTTCGAGAAGCGTGTCGGCGACTATCAG 3935
>seq4403
Length=14617
Score = 89.7 bits (98), Expect = 5e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||||||||| |||| || | || | || |||||||| |||||||| |||||
Sbjct 4951 CCACCGCGCAAGCGCAAAACCAGGTGGAGAGTAGACTCCTTCTGAATGTTATAATCTGAG 5010
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || ||||| ||||||||||| ||| | |||| ||||| ||||| ||||||
Sbjct 5011 AGTGTCCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATTAGCCGCTGTTGGTCTGGAGGG 5070
Query 131128 ATTCCTTCTTTGTCGGT 131144
||||| || || || ||
Sbjct 5071 ATTCCCTCCTTATCTGT 5087
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471961645612800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |