Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq5240 113 4e-20 seq4403 89.7 5e-13 >seq5240 Length=8030 Score = 113 bits (124), Expect = 4e-20 Identities = 342/522 (66%), Gaps = 21/522 (4%) Strand=Plus/Minus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCG---CG 46143 || ||| | || ||||| | || ||||| || | |||||| ||| | || | || Sbjct 4444 CCCTGCATCCGTAAGAAGGCTGATTGGGCCATTCATTGGATC--CAGGA-CAAGGAGTCG 4388 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 ||||| ||| | || |||||||||| || || ||||| ||||||| || || Sbjct 4387 ACTTTTGCCCAACGACTGGTGGCCTTCGCTGCCGTCGAGGGTATCTTTTTCTCAGGTTCA 4328 Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 ||||| ||||||| | | || | ||| | |||||||| |||| || || Sbjct 4327 TTTGCTTCCATCTTCTGGTTGAAGAAGCGCGGCTTGATGCCCGGATTGACATTCTCAAAT 4268 Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACT 46323 |||||||| ||||| |||||||||||||| || |||||||| || |||| | || Sbjct 4267 GAGCTGATTTCGCGTGACGAGGGCCTGCACACCGACTTTGCCTGCCTCTTGT-----TCT 4213 Query 46324 CGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGC------ATGTTCAAGGAGGCG 46377 | | | | || | | || ||| || | | | | | || ||| || || Sbjct 4212 CCCAT-CTAAACCACC--GC-CCCAGCAAGGAGGTCATCCAAGATATTATCACTGACGCT 4157 Query 46378 GTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC 46437 || || |||||| | ||||| || || | || || || | | | ||||| || |||||| Sbjct 4156 GTTGCAATTGAGCAAGAGTTCTTAACCGAGGCCCTTCCAGTTTCTCTGCTCGGAATGAAC 4097 Query 46438 GCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCAC 46497 | || ||||| | ||||||||||| || || || | || ||||| ||| Sbjct 4096 TCGAAGCTGATGTGTCAATACATCGAGTTCGTTGCTGATAGGCTCCTCGTTGCCCTTGGA 4037 Query 46498 CAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAG 46557 | |||||| | | | | |||||| ||||| || ||| | | || || ||| Sbjct 4036 AACAAGAAGCACTACAATGTGACCAATCCCTTTGATTTCATGGAAAGTATATCTTTGGCT 3977 Query 46558 GGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTATAAG 46599 || ||||| || || ||||| ||||| |||||||| ||| || Sbjct 3976 GGTAAAACCAACTTCTTCGAGAAGCGTGTCGGCGACTATCAG 3935 >seq4403 Length=14617 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||||||||| |||| || | || | || |||||||| |||||||| ||||| Sbjct 4951 CCACCGCGCAAGCGCAAAACCAGGTGGAGAGTAGACTCCTTCTGAATGTTATAATCTGAG 5010 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||||||||| ||| | |||| ||||| ||||| |||||| Sbjct 5011 AGTGTCCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATTAGCCGCTGTTGGTCTGGAGGG 5070 Query 131128 ATTCCTTCTTTGTCGGT 131144 ||||| || || || || Sbjct 5071 ATTCCCTCCTTATCTGT 5087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471961645612800