Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5240 129 7e-25 >seq5240 Length=8030 Score = 129 bits (142), Expect = 7e-25 Identities = 231/333 (69%), Gaps = 6/333 (2%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 |||||||| || || || ||||| ||| |||||| | | |||||||| || ||| Sbjct 4056 CTATCAGCAACGAACTCGATGTATTGACACATCAGCTTCGAGTTCATTCCGAGCAGAGAA 4115 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || || || || ||||| ||||| |||| ||| ||| |||| || || | | || ||| Sbjct 4116 ACTGGAAGGGCCTCGGTTAAGAACTCTTGCTCAATTGCAACAGCGTCAGTGATAATATCT 4175 Query 93044 ---ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAG 93100 || || || || ||| || | || | || | ||| | ||| |||||| Sbjct 4176 TGGATGAC-CTCCTTGCTGG-GGCGGTGGTTT-AGATGGGAGAACAAGAGGCAGGCAAAG 4232 Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160 ||||| || | || ||||| || || |||| |||||| |||||| || || || | | Sbjct 4233 TCGGTGTGCAGGCCCTCGTCACGCGAAATCAGCTCATTTGAGAATGTCAATCCGGGCATC 4292 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 | || || ||||| | ||| || || |||||||| ||| || ||||| ||||| || Sbjct 4293 AAGCCGCGCTTCTTCAACCAGAAGATGGAAGCAAATGAACCTGAGAAAAAGATACCCTCG 4352 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 ||||| || || ||||| | |||| ||||||| Sbjct 4353 ACGGCAGCGAAGGCCACCAGTCGTTGGGCAAAA 4385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556800450210800