Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq6412 149 1e-30 seq3205 114 2e-20 seq4403 113 8e-20 seq7471 84.2 4e-11 >seq6412 Length=17604 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 || || ||||||||||| |||||||| || | || || |||||||||| |||||||| Sbjct 16518 GTCGATTCTTTTTGGATATTATAATCAGATAACGTTCTGCCATCTTCTAGTTGCTTCCCA 16577 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 ||||| || | | ||| |||||||| || || || ||||| ||||| || |||| |||| Sbjct 16578 GCGAAGATCAACCGTTGCTGGTCGGGGGGGATACCCTCCTTATCTTGGATTTTTGACTTG 16637 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 || ||||| ||||||| || || ||||| | || || || || || || |||||| Sbjct 16638 ACATTATCGATCGTGTCTGACGACTCGACTTCTAGCGTAATCGTCTTCCCAGTTAGGGTC 16697 Query 68445 TTGACGAATATCTGCAT 68461 |||||||| || ||||| Sbjct 16698 TTGACGAAAATTTGCAT 16714 Score = 132 bits (146), Expect = 9e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 || |||||||| ||||| |||||||| || || |||| || || || | || ||||| Sbjct 16746 GTAGACTCTTTCTGGATATTATAATCAGACAGCGTCCGGCCGTCCTCCAGTTGTTTCCCA 16805 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || | | ||| |||||||| || ||||| ||||| || || ||||||| ||| Sbjct 16806 GCAAAGATCAACCGTTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTTGATTTG 16865 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 || ||||| || |||| ||| || ||||| | || || || || || || |||||| Sbjct 16866 ACATTATCGATCGTATCTGATGACTCAACTTCTAGCGTAATCGTCTTCCCAGTTAGGGTC 16925 Query 68445 TTGACGAATATCTGCATT 68462 |||||||| || |||||| Sbjct 16926 TTGACGAAAATTTGCATT 16943 >seq3205 Length=38634 Score = 114 bits (126), Expect = 2e-20 Identities = 135/180 (75%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || || || || ||| ||||||| || || || | ||||| |||||||| || Sbjct 37386 TTCTGAATATTGTAGTCGTTCAGTGTCCGACCGTCCTCGAGTTGCTTTCCGGCGAAAATT 37445 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | ||||| ||||||||||| || ||||| || |||||||| | ||| || ||| Sbjct 37446 AAACGCTGTTGATCGGGTGGAATCCCCTCCTTATCCTGAATCTTCGACTTCACATTGTCG 37505 Query 68394 ATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| ||| || ||||| || | ||| ||||| || ||||| |||||||||||||| Sbjct 37506 ATTGTGTC-GCTCGACTCTACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 37564 >seq4403 Length=14617 Score = 113 bits (124), Expect = 8e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| | |||||| |||| ||| || || ||||| || || ||||||||||| ||| Sbjct 4951 CCACCGCGCAAGCGCAAAACCAGGTGGAGAGTAGACTCCTTCTGAATGTTATAATCTGAG 5010 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||||| ||||| || | |||||| |||||||| || || | |||||||| || || Sbjct 5011 AGTGTCCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATTAGCCGCTGTTGGTCTGGAGGG 5070 Query 68355 ATGCCTTCCTTGTCT 68369 || || ||||| ||| Sbjct 5071 ATTCCCTCCTTATCT 5085 >seq7471 Length=5597 Score = 84.2 bits (92), Expect = 4e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 225515 AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCA 225574 ||||| || || || |||| |||| ||||| || |||||||| || ||||||||||| Sbjct 3071 AGCCAAGCAACATTTTTGACATCCAAATGGTTGGTCGGTTCGTCAAGCAGCAGGATGTCT 3012 Query 225575 GCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633 | || || | ||| || | |||| ||||||||| ||||| || ||||||||||| Sbjct 3011 GGCTCTTCGAACACGGCCCGGGCAAGAGCCAGCTTCATCTTCCAACCGCCGGACAGGGA 2953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921522519172400