Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5240 174 3e-38 >seq5240 Length=8030 Score = 174 bits (192), Expect = 3e-38 Identities = 349/514 (68%), Gaps = 5/514 (1%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||| || ||||| | | |||||| || || | || Sbjct 4444 CCCTGCATCCGTAAGAAGGCTGATTGGGCCATTCATTGGATCCAGGACAAGGAGTCGACT 4385 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | | | | ||||| ||||| | ||||||||||| ||||| ||||| || | || Sbjct 4384 TTTGCCCAACGACTGGTGGCCTTCGCTGCCGTCGAGGGTATCTTTTTCTCAGGTTCATTT 4325 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 || |||||||||||| | ||| || | | |||||||||| | || ||||| || || Sbjct 4324 GCTTCCATCTTCTGGTTGAAGAAGCGCGGCTTGATGCCCGGATTGACATTCTCAAATGAG 4265 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 || || | |||||||| ||||| | ||||||||||||||| ||||||| ||| Sbjct 4264 CTGATTTCGCGTGACGAGGGCCTGCACACCGACTTTGCCTGCCTCTTGTTCTC---CCAT 4208 Query 42873 CTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATC 42932 || | ||| ||| |||||| ||| | || ||||| || || || | || Sbjct 4207 CTAAACCACCGCCCCAGCAAGGAGGTCATCCAAGATATTATCACTGACGCTGTTGCAATT 4148 Query 42933 GAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTC 42992 ||| | |||||| | || || | || || || || ||| |||| |||||| | || Sbjct 4147 GAGCAAGAGTTCTTAACCGAGGCCCTTCCAGTTTCTCTGCTCGGAATGAACTCGAAGCTG 4088 Query 42993 ATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCG 43051 ||||| | |||||| ||| ||| || || ||||| || | ||| || | Sbjct 4087 ATGTGTCAATACATCGAGTTCGTTGCTGATAGGCTCCTCGTTGCCCTTGGAAACAAGAAG 4028 Query 43052 CCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGAC 43111 | |||||| | | ||||| || || ||||| | || || |||| || || || Sbjct 4027 -CACTACAATGTGACCAATCCCTTTGATTTCATGGAAAGTATATCTTTGGCTGGTAAAAC 3969 Query 43112 CAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||| ||||||||||| |||| |||||| ||| Sbjct 3968 CAACTTCTTCGAGAAGCGTGTCGGCGACTATCAG 3935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944236857239200