Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6412 141 2e-28 seq3205 120 7e-22 seq5240 91.5 3e-13 >seq6412 Length=17604 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| |||||||| | || ||||| ||||||||||| || | Sbjct 16716 CCACCACGGAGACGAAGGACGAGATGCAAAGTAGACTCTTTCTGGATATTATAATCAGAC 16775 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || ||||| || | |||||| || || ||||||| || || || ||| Sbjct 16776 AGCGTCCGGCCGTCCTCCAGTTGTTTCCCAGCAAAGATCAACCGTTGCTGGTCGGGGGGG 16835 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || | ||| || || || || | ||| || || ||| Sbjct 16836 ATGCCCTCCTTATCCTGGATCTTTGATTTGACATTATCGATCGTATCTGATGACTCAACT 16895 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||||||||| || || ||||||||||| || |||||| Sbjct 16896 TCTAGCGTAATCGTCTTCCCAGTTAGGGTCTTGACGAAAATTTGCATT 16943 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| |||||||| | || |||||||||||||||||| || | Sbjct 16488 CCACCACGGAGACGAAGGACGAGATGCAAAGTCGATTCTTTTTGGATATTATAATCAGAT 16547 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| | || ||||||| ||| || || |||||||||| || || || ||| Sbjct 16548 AACGTTCTGCCATCTTCTAGTTGCTTCCCAGCGAAGATCAACCGTTGCTGGTCGGGGGGG 16607 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| |||||||| | || || || || || | || ||| || ||| Sbjct 16608 ATACCCTCCTTATCTTGGATTTTTGACTTGACATTATCGATCGTGTCTGACGACTCGACT 16667 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||||||||| || || ||||||||||| || ||||| Sbjct 16668 TCTAGCGTAATCGTCTTCCCAGTTAGGGTCTTGACGAAAATTTGCAT 16714 >seq3205 Length=38634 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || || ||||| |||||| || || || ||||| || | ||| ||||| ||||| || Sbjct 37386 TTCTGAATATTGTAGTCGTTCAGTGTCCGACCGTCCTCGAGTTGCTTTCCGGCGAAAATT 37445 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | |||||||||| ||| || || || |||||||| || |||| ||||| || || Sbjct 37446 AAACGCTGTTGATCGGGTGGAATCCCCTCCTTATCCTGAATCTTCGACTTCACATTGTCG 37505 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | |||||||| ||||| || || || || ||||| || ||||| ||||||||||| Sbjct 37506 ATTGTGTCGCTCGACTCTACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 37564 >seq5240 Length=8030 Score = 91.5 bits (100), Expect = 3e-13 Identities = 168/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157 || || ||| ||| || |||||||| | || || | ||| |||| || |||| Sbjct 4162 GACGCTGTTGCAATTGAGCAAGAGTTCTTAACCGAGGCCCTTCCAGTTTCTCTGCTCGGA 4103 Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCA 269217 ||||| | | || ||| |||||| ||||| ||||| |||||| | || || || Sbjct 4102 ATGAACTCGAAGCTGATGTGTCAATACATCGAGTTCGTTGCTGATAGGCTCCTCGTTGCC 4043 Query 269218 CTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCG 269277 || || | |||| |||||| || |||||||| | || |||||| || || Sbjct 4042 CTTGGAAACAAGAAGCACTACAATGTGACCAATCCCTTTGATTTCATGGAAAGTATATCT 3983 Query 269278 CTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACGTCCTGGTGT 269336 | | || || || ||||||||||| ||||||||| |||||||||| | | || ||||| Sbjct 3982 TTGGCTGGTAAAACCAACTTCTTCGAGAAGCGTGTCGGCGACTATCAGAAGGCC-GGTGT 3924 Query 269337 AATG 269340 ||| Sbjct 3923 CATG 3920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179523358828260