Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6412 107 2e-18 seq3205 84.2 2e-11 >seq6412 Length=17604 Score = 107 bits (118), Expect = 2e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 |||||| ||| |||||| || || |||||||||| | ||||| | || || || || Sbjct 16967 ATGCAAAGTGGACTCCTTCTGTATGTTGTAATCAGATAACGTCCGGCCATCCTCCAGTTG 17026 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| ||||| ||||| | ||||| ||||| | || | || |||||||||| ||| | | Sbjct 17027 CTTGCCAGCAAATATCAACCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCC-TGAATCT 17085 Query 42125 TTGTTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 42183 | | || | ||| || |||||||||||| || || || | |||||||| || |||| Sbjct 17086 TAGCTTTAACGTTATCAATCGTGTCGCTCGACTCGACCTCTAGGGTGATGGTCTTTCCCG 17145 Query 42184 TTA 42186 ||| Sbjct 17146 TTA 17148 >seq3205 Length=38634 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| ||||||||||| || ||| ||||| |||| || || ||||| || ||||| | Sbjct 37384 CCTTCTGAATATTGTAGTCGTTCAGTGTCCGACCGTCCTCGAGTTGCTTTCCGGCGAAAA 37443 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 42137 | | ||||| || |||| ||| | | |||||| ||| ||| | || | || | | Sbjct 37444 TTAAACGCTGTTGATCGGGTGGAATCCCCTCCTTATCC-TGAATCTTCGACTTCACATTG 37502 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||||||||| || || || | || ||||| || ||||| || ||||| || Sbjct 37503 TCGATTGTGTCGCTCGACTCTACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 37562 Query 42198 AAG 42200 ||| Sbjct 37563 AAG 37565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543153929312800