Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5240 111 2e-19 seq3205 86.0 6e-12 >seq5240 Length=8030 Score = 111 bits (122), Expect = 2e-19 Identities = 342/524 (65%), Gaps = 19/524 (4%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG-- 52383 || || ||| | || || |||||| | ||||| || | |||||| || |||| | Sbjct 4447 GTTCCCTGCATCCGTAAGAAGGCTGATTGGGCCATTCATTGGATCCAG---GACAAGGAG 4391 Query 52384 -CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442 | || | ||| | || ||||||||||||| |||||||| | ||||| || || Sbjct 4390 TCGACTTTTGCCCAACGACTGGTGGCCTTCGCTGCCGTCGAGGGTATCTTTTTCTCAGGT 4331 Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502 ||||| ||||||| | | || | | ||| | |||||||| |||| ||| Sbjct 4330 TCATTTGCTTCCATCTTCTGGTTGAAGAAGCGCGGCTTGATGCCCGGATTGACATTCTCA 4271 Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACTAC 52559 || ||| |||| ||||| ||||| || |||||||| |||||||| |||||| | || | Sbjct 4270 AATGAGCTGATTTCGCGTGACGAGGGCCTGCACACCGACTTTGCCTGCCTCTTGTTCTCC 4211 Query 52560 AA--GACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGG 52617 | | | | || | || ||| || | |||| || ||| || | Sbjct 4210 CATCTAAACCACCGCCCCAGCAA--GGA---GGTC---ATCCAAGATATTATCACTGACG 4159 Query 52618 CGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGA 52677 | || || || || | ||||| || || | || || || || ||||| || |||| Sbjct 4158 CTGTTGCAATTGAGCAAGAGTTCTTAACCGAGGCCCTTCCAGTTTCTCTGCTCGGAATGA 4099 Query 52678 ACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 52737 || || || ||||| | ||||||||||| || || ||| | || | || || | Sbjct 4098 ACTCGAAGCTGATGTGTCAATACATCGAGTTCGTTGCTGATAGGCTCCTCGTTGCCCTTG 4039 Query 52738 GGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTG 52797 | | ||| ||| ||| | |||||| ||||| || ||| | | || || | | Sbjct 4038 GAAACAAGAAGCACTACAATGTGACCAATCCCTTTGATTTCATGGAAAGTATATCTTTGG 3979 Query 52798 AGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841 || || |||||||| ||||||||||| |||||||| ||| || Sbjct 3978 CTGGTAAAACCAACTTCTTCGAGAAGCGTGTCGGCGACTATCAG 3935 >seq3205 Length=38634 Score = 86.0 bits (94), Expect = 6e-12 Identities = 131/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| ||||| ||||||||| ||| || || |||||||||||| || |||| | | Sbjct 37384 CCTTCTGAATATTGTAGTCGTTCAGTGTCCGACCGTCCTCGAGTTGCTTTCCGGCGAAAA 37443 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTG 138542 ||| ||||||||| || || || || || || || || ||| | || | || |||| Sbjct 37444 TTAAACGCTGTTGATCGGGTGGAATCCCCTCCTTATC-CTGAATCTTCGACTTCACATTG 37502 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||| ||||||| ||||| | || | || ||||| ||||| || || || Sbjct 37503 -TCGATTGTGTCGCTCGACTCTACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTGAC 37561 Query 138603 AAA 138605 || Sbjct 37562 GAA 37564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496208617562400