Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6412 140 3e-28 >seq6412 Length=17604 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172 || || ||||| | | || ||||||| || ||||| ||||||||||||||||| | | Sbjct 16488 CCACCACGGAGACGAAGGACGAGATGCAAAGTCGATTCTTTTTGGATATTATAATCAGAT 16547 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || ||| | ||| || | ||| || || ||| | ||||| ||||||||||| || || Sbjct 16548 AAC-GTTCTGCCATCTTCTAGTTGCTTCCCAGCGAAGATCAACCGTTGCTGGTCGGGGGG 16606 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 || || || |||||||| |||||| |||| || | ||||| || |||||||| Sbjct 16607 GATACCCTCCTTATCTTGGATTTTTGACTTGACATTATCGATCGTGTCTGACGACTCGAC 16666 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || |||| ||| || || ||||| || || || |||||||||||| Sbjct 16667 TTCTAGCGTAATCGTCTTCCCAGTTAGGGTCTTGACGAAAATTTGCATC 16715 Score = 113 bits (124), Expect = 4e-20 Identities = 170/240 (71%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||||| || || || || |||||||||||||| Sbjct 16713 ATCCCACCACGGAGACGAAGGACGAGATGCAAAGTAGACTCTTTCTGGATATTATAATCA 16772 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | || |||| |||||| || || | ||||| ||||||||||| | Sbjct 16773 --GACAGCGTCCGGCCGTCCTCCAGTTGTTTCCCAGCAAAGATCAACCGTTGCTGGTCGG 16830 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || ||||| || ||||| || || ||| ||||| || | || || || |||| Sbjct 16831 GGGGGATGCCCTCCTTATCCTGGATCTTTGATTTGACATTATCGATCGTATCTGATGACT 16890 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 | ||||| || |||| ||| || || ||||| || || || ||||||||||| ||| || Sbjct 16891 CAACTTCTAGCGTAATCGTCTTCCCAGTTAGGGTCTTGACGAAAATTTGCATTCCGCCAC 16950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451954214153200