Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq5240 178 1e-39
seq6412 91.5 1e-13
>seq5240
Length=8030
Score = 178 bits (196), Expect = 1e-39
Identities = 343/500 (69%), Gaps = 6/500 (1%)
Strand=Plus/Plus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
|| ||||| ||||| || ||||| || || || ||||| || |||| || ||
Sbjct 3933 TTCTGATAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTACCAGCCAAAGATATACTT 3992
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGC 132723
||| ||||| ||||| |||| ||||||||||| || ||| | |||||
Sbjct 3993 TCCATGAAATCAAAGGGATTGGTCACATTGTAGTGCTTCTTGTTTCCAAGGGCAACGAGG 4052
Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAG 132782
||||| || || ||||||||||||||||| |||| | |||| | || | ||| |||||
Sbjct 4053 AGCCTATCAGCAACGAACTCGATGTATTGACACATCAGCTTCG-AGTTCATTCCGAGCAG 4111
Query 132783 ACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT 132842
| || || || || ||||| | || |||||| || || || ||||| |||| ||
Sbjct 4112 AGAAACTGGAAGGGCCTCGGTTAAGAACTCTTGCTCAATTGCAACAGCGTCAGTGATAAT 4171
Query 132843 TTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAA 132902
|| | | | || ||| || || || | ||| ||||| | ||| |||||
Sbjct 4172 ATCTTGGATGACCTCCTTGCTGGGGCGGTGGTTTAGATGGGAGAACAAGAGGCAGGCAAA 4231
Query 132903 GTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCAT 132962
|||| |||| ||||||||| | ||||| || || || ||| ||||| ||||||||
Sbjct 4232 GTCGGTGTGCAGGCCCTCGTCACGCGAAATCAGCTCATTTGAGAATGTCAATCCGGGCAT 4291
Query 132963 GAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTC 133022
| |||||| || || | ||| || |||| || || || || || |||| |||||
Sbjct 4292 CAAGCCGCGCTTCTTCAACCAGAAGATGGAAGCAAATGAACCTGAGAAAAAGATACCCTC 4351
Query 133023 GACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGT-GGCTTCTT-TGCTGGCGATCCAG 133080
|||||| ||||| |||||||| || | | | || || | || ||| | ||| ||||||
Sbjct 4352 GACGGCAGCGAAGGCCACCAGTCGTTGGGCAAAAGTCGACTCCTTGTCCTG--GATCCAA 4409
Query 133081 CGCAGCGCCCATTCGGCCTT 133100
| | ||||| || |||||
Sbjct 4410 TGAATGGCCCAATCAGCCTT 4429
Score = 118 bits (130), Expect = 1e-21
Identities = 192/276 (70%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||||||||||||||| ||| || | || ||||| | ||| ||||| ||| |||||
Sbjct 4558 GTAGGTGTCGATGAGCAACGAGTATGTCTCTGAGTGGATGTTTTCCATCATGATCTGAAA 4617
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|| || ||||| || || || | ||| || || ||| ||||||||||| ||
Sbjct 4618 TCCATAGAAGCAACGAGCTTCAGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTT 4677
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||||||||| || ||||| || || ||||| || | ||||| | ||
Sbjct 4678 CTCGTTGACGATGCCATCTGACGCGGCAAAGAACGCCAGGACACGGGAAATGAAGTACCG 4737
Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | | ||| | ||| | |||||| || || ||||| || || | ||| ||
Sbjct 4738 CTCATCATTGTTGAGGCGGTTGTTCCAGTCTTGCAGATCTTTGGATAGATCAATCTCTTC 4797
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| || ||||| |||||||| ||||||||
Sbjct 4798 AGCCGTCCAGAATGACGCTTCGGCTTTCTTGTACAT 4833
>seq6412
Length=17604
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGTGCAAACGCTTAAAGA 38326
||||| || ||||||||| | || |||||| | | ||||| | || |||| ||||||
Sbjct 17146 ACGGGAAAGACCATCACCCTAGAGGTCGAGTCGAGCGACACGATTGATAACG-TTAAAGC 17088
Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386
|| || | ||||| ||||| || ||| | |||||||||||| | || | || |||||
Sbjct 17087 TAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGGTTGATATTTGCTGGCAA 17028
Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
|| ||||| || | || || | || |||||||| || ||||| | || ||||
Sbjct 17027 GCAACTGGAGGATGGCCGGACGTTATCTGATTACAACATACAGAAGGAGTCCACTTTGCA 16968
Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470
| | || || ||| | | |||||
Sbjct 16967 TCTCGTCCTCCGTCTCCGTGGCGG 16944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500118593772800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |