Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5240 178 1e-39 seq6412 91.5 1e-13 >seq5240 Length=8030 Score = 178 bits (196), Expect = 1e-39 Identities = 343/500 (69%), Gaps = 6/500 (1%) Strand=Plus/Plus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || ||||| ||||| || ||||| || || || ||||| || |||| || || Sbjct 3933 TTCTGATAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTACCAGCCAAAGATATACTT 3992 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGC 132723 ||| ||||| ||||| |||| ||||||||||| || ||| | ||||| Sbjct 3993 TCCATGAAATCAAAGGGATTGGTCACATTGTAGTGCTTCTTGTTTCCAAGGGCAACGAGG 4052 Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAG 132782 ||||| || || ||||||||||||||||| |||| | |||| | || | ||| ||||| Sbjct 4053 AGCCTATCAGCAACGAACTCGATGTATTGACACATCAGCTTCG-AGTTCATTCCGAGCAG 4111 Query 132783 ACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT 132842 | || || || || ||||| | || |||||| || || || ||||| |||| || Sbjct 4112 AGAAACTGGAAGGGCCTCGGTTAAGAACTCTTGCTCAATTGCAACAGCGTCAGTGATAAT 4171 Query 132843 TTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAA 132902 || | | | || ||| || || || | ||| ||||| | ||| ||||| Sbjct 4172 ATCTTGGATGACCTCCTTGCTGGGGCGGTGGTTTAGATGGGAGAACAAGAGGCAGGCAAA 4231 Query 132903 GTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCAT 132962 |||| |||| ||||||||| | ||||| || || || ||| ||||| |||||||| Sbjct 4232 GTCGGTGTGCAGGCCCTCGTCACGCGAAATCAGCTCATTTGAGAATGTCAATCCGGGCAT 4291 Query 132963 GAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTC 133022 | |||||| || || | ||| || |||| || || || || || |||| ||||| Sbjct 4292 CAAGCCGCGCTTCTTCAACCAGAAGATGGAAGCAAATGAACCTGAGAAAAAGATACCCTC 4351 Query 133023 GACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGT-GGCTTCTT-TGCTGGCGATCCAG 133080 |||||| ||||| |||||||| || | | | || || | || ||| | ||| |||||| Sbjct 4352 GACGGCAGCGAAGGCCACCAGTCGTTGGGCAAAAGTCGACTCCTTGTCCTG--GATCCAA 4409 Query 133081 CGCAGCGCCCATTCGGCCTT 133100 | | ||||| || ||||| Sbjct 4410 TGAATGGCCCAATCAGCCTT 4429 Score = 118 bits (130), Expect = 1e-21 Identities = 192/276 (70%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||||||||| ||| || | || ||||| | ||| ||||| ||| ||||| Sbjct 4558 GTAGGTGTCGATGAGCAACGAGTATGTCTCTGAGTGGATGTTTTCCATCATGATCTGAAA 4617 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 || || ||||| || || || | ||| || || ||| ||||||||||| || Sbjct 4618 TCCATAGAAGCAACGAGCTTCAGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTT 4677 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||||||||| || ||||| || || ||||| || | ||||| | || Sbjct 4678 CTCGTTGACGATGCCATCTGACGCGGCAAAGAACGCCAGGACACGGGAAATGAAGTACCG 4737 Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | | ||| | ||| | |||||| || || ||||| || || | ||| || Sbjct 4738 CTCATCATTGTTGAGGCGGTTGTTCCAGTCTTGCAGATCTTTGGATAGATCAATCTCTTC 4797 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || ||||| |||||||| |||||||| Sbjct 4798 AGCCGTCCAGAATGACGCTTCGGCTTTCTTGTACAT 4833 >seq6412 Length=17604 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGTGCAAACGCTTAAAGA 38326 ||||| || ||||||||| | || |||||| | | ||||| | || |||| |||||| Sbjct 17146 ACGGGAAAGACCATCACCCTAGAGGTCGAGTCGAGCGACACGATTGATAACG-TTAAAGC 17088 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || || | ||||| ||||| || ||| | |||||||||||| | || | || ||||| Sbjct 17087 TAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGGTTGATATTTGCTGGCAA 17028 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || ||||| || | || || | || |||||||| || ||||| | || |||| Sbjct 17027 GCAACTGGAGGATGGCCGGACGTTATCTGATTACAACATACAGAAGGAGTCCACTTTGCA 16968 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470 | | || || ||| | | ||||| Sbjct 16967 TCTCGTCCTCCGTCTCCGTGGCGG 16944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500118593772800