Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq6412 113 2e-19 seq3638 109 2e-18 seq3205 87.8 7e-12 >seq6412 Length=17604 Score = 113 bits (124), Expect = 2e-19 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || ||||| || || ||||| || || || || || || Sbjct 16714 ATGCAAATTTTCGTCAAGACCCTAACTGGGAAGACGATTACGCTAGAAGTCGAGTCGTCA 16655 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | | || |||||| ||||||||||| || || || || || || Sbjct 16654 GACACGATCGATAATGTCAAGTCAAAAATCCAAGATAAGGAGGGTATCCCCCCCGACCAG 16595 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || || ||| | ||||| ||||| |||||||| ||||| || | ||||||||| Sbjct 16594 CAACGGTTGATCTTCGCTGGGAAGCAACTAGAAGATGGCAGAACGTTATCTGATTATAAT 16535 Query 391230 AT 391231 || Sbjct 16534 AT 16533 Score = 105 bits (116), Expect = 3e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || || || ||||| || || ||||| || || ||||| ||||| Sbjct 16943 AATGCAAATTTTCGTCAAGACCCTAACTGGGAAGACGATTACGCTAGAAGTTGAGTCATC 16884 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| || || | | ||| ||| || || |||||||| || || || || || || Sbjct 16883 AGATACGATCGATAATGTCAAATCAAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCA 16824 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||| || || || | ||||||||||| || || || | || || | |||||||| Sbjct 16823 GCAACGGTTGATCTTTGCTGGGAAACAACTGGAGGACGGCCGGACGCTGTCTGATTATAA 16764 Query 391229 TAT 391231 ||| Sbjct 16763 TAT 16761 >seq3638 Length=54862 Score = 109 bits (120), Expect = 2e-18 Identities = 190/277 (69%), Gaps = 11/277 (4%) Strand=Plus/Minus Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 |||| ||||| ||||| ||||| ||| | ||||||||||| ||||| ||||| || || | Sbjct 18503 TTACCGTTCCTGCTTACTTCAACGATTCTCAACGGCAAGCCACTAAGGATGCCGGCCAGA 18444 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448 |||| || | |||||||| || || | ||||| || ||||| ||||| |||| || | Sbjct 18443 TTGCCGGCCTTAATGTTCTGCGCGTTGTCAATGAGCCCACAGCTGCTGCCTTAGCCTACG 18384 Query 451449 GACTAGGAAAATCAAAAGAAACAGAA-GaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 | || | |||| |||| || | |||| || | || | ||||| Sbjct 18383 GTCTCG----------AGAAGGAGAATGATCGCATTATTGCTGTCTACGACCTCGGTGGC 18334 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACC 451567 || ||| |||| ||| | ||| ||| || | || || ||||| || || | ||| Sbjct 18333 GGTACTTTCGATATCTCTATTCTTGAAATCCAAAAGGGCGTTTTTGAGGTGAAATCCACC 18274 Query 451568 AATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604 || || || || ||||| || ||||| ||| | |||| Sbjct 18273 AACGGCGACACCCATCTTGGTGGTGAGGATTTCGATA 18237 >seq3205 Length=38634 Score = 87.8 bits (96), Expect = 7e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 391059 TTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATT 391118 ||||| || || ||||| ||||| || ||||| ||||| || || || || | || Sbjct 37564 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTAGAGTCGAGCGACACAATC 37505 Query 391119 GAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTA 391178 || | | || || ||||| |||||||| || ||||| || |||||||| |||||| Sbjct 37504 GACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGGATTCCACCCGATCAACAGCGTTTA 37445 Query 391179 ATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAG 391238 |||||| | || || ||||| || || || | || || || || |||||| | ||| Sbjct 37444 ATTTTCGCCGGAAAGCAACTCGAGGACGGTCGGACACTGAACGACTACAATATTCAGAAG 37385 Query 391239 G 391239 | Sbjct 37384 G 37384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975498928556360