Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5240 111 2e-19 >seq5240 Length=8030 Score = 111 bits (122), Expect = 2e-19 Identities = 331/507 (65%), Gaps = 14/507 (3%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || ||||| ||| | || | || || ||||| || ||||| || | || ||||||| | Sbjct 3933 TTCTGATAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTACCAGCCAAAGATATACTT 3992 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| |||||||| ||||| | ||||| || || ||| ||| | | | || Sbjct 3993 TCCATGAAATCAAAGGGATTGGTCACATTGTAGTGCTTCTTGTTTCCAAGGGCAACGAGG 4052 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 || ||||| || || || | || ||| ||||| | | |||||||| | | Sbjct 4053 AGCCTATCAGCAACGAACTCGATGTATTGACACATCAGCTTCGAGTTCATTCCGAGCAGA 4112 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 ||| || || || || || | || ||||| || || || || || | |||||| Sbjct 4113 GAAACTGGAAGGGCCTCGGTTAAGAACTCTTGCTCAATTGCAACAGCGTCAGTGATAATA 4172 Query 18910 -----GATACAACTCTATCTTCATTAGGAGG--GTATAGAAGATGTTTAAACATCAAACA 18962 ||| | ||| ||| | || || || |||| || |||| | || Sbjct 4173 TCTTGGATG-ACCTC---CTTGCTGGGGCGGTGGTTTAGA---TGGGAGAACAAGAGGCA 4225 Query 18963 TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACC 19022 ||||| || || || |||||||| | |||| ||||| || ||||| || || Sbjct 4226 GGCAAAGTCGGTGTGCAGGCCCTCGTCACGCGAAATCAGCTCATTTGAGAATGTCAATCC 4285 Query 19023 AGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATAT 19082 ||||||| || | || || |||||||| || ||||||||||| || || || || || Sbjct 4286 GGGCATCAAGCCGCGCTTCTTCAACCAGAAGATGGAAGCAAATGAACCTGAGAAAAAGAT 4345 Query 19083 ACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAAT 19142 ||| || || || || || || || |||| || || || | | || || | || || Sbjct 4346 ACCCTCGACGGCAGCGAAGGCCACCAGTCGTTGGGCAAAAGTCGACTCCTTGTCCTGGAT 4405 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTT 19169 ||| | | ||||||||||||||||| Sbjct 4406 CCAATGAATGGCCCAATCAGCCTTCTT 4432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562047881458800