Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq5240 111 2e-19
>seq5240
Length=8030
Score = 111 bits (122), Expect = 2e-19
Identities = 331/507 (65%), Gaps = 14/507 (3%)
Strand=Plus/Plus
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
|| ||||| ||| | || | || || ||||| || ||||| || | || ||||||| |
Sbjct 3933 TTCTGATAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTACCAGCCAAAGATATACTT 3992
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
||||| |||||||| ||||| | ||||| || || ||| ||| | | | ||
Sbjct 3993 TCCATGAAATCAAAGGGATTGGTCACATTGTAGTGCTTCTTGTTTCCAAGGGCAACGAGG 4052
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
|| ||||| || || || | || ||| ||||| | | |||||||| | |
Sbjct 4053 AGCCTATCAGCAACGAACTCGATGTATTGACACATCAGCTTCGAGTTCATTCCGAGCAGA 4112
Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909
||| || || || || || | || ||||| || || || || || | ||||||
Sbjct 4113 GAAACTGGAAGGGCCTCGGTTAAGAACTCTTGCTCAATTGCAACAGCGTCAGTGATAATA 4172
Query 18910 -----GATACAACTCTATCTTCATTAGGAGG--GTATAGAAGATGTTTAAACATCAAACA 18962
||| | ||| ||| | || || || |||| || |||| | ||
Sbjct 4173 TCTTGGATG-ACCTC---CTTGCTGGGGCGGTGGTTTAGA---TGGGAGAACAAGAGGCA 4225
Query 18963 TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACC 19022
||||| || || || |||||||| | |||| ||||| || ||||| || ||
Sbjct 4226 GGCAAAGTCGGTGTGCAGGCCCTCGTCACGCGAAATCAGCTCATTTGAGAATGTCAATCC 4285
Query 19023 AGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATAT 19082
||||||| || | || || |||||||| || ||||||||||| || || || || ||
Sbjct 4286 GGGCATCAAGCCGCGCTTCTTCAACCAGAAGATGGAAGCAAATGAACCTGAGAAAAAGAT 4345
Query 19083 ACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAAT 19142
||| || || || || || || || |||| || || || | | || || | || ||
Sbjct 4346 ACCCTCGACGGCAGCGAAGGCCACCAGTCGTTGGGCAAAAGTCGACTCCTTGTCCTGGAT 4405
Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTT 19169
||| | | |||||||||||||||||
Sbjct 4406 CCAATGAATGGCCCAATCAGCCTTCTT 4432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562047881458800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |