Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3638 89.7 4e-12 seq6412 87.8 1e-11 >seq3638 Length=54862 Score = 89.7 bits (98), Expect = 4e-12 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 |||| | ||| || | || || || || || || || || || ||||| ||||| ||| Sbjct 18519 GTTAAGAATGGTGTCGTTACCGTTCCTGCTTACTTCAACGATTCTCAACGGCAAGCCACT 18460 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || ||||| || | ||||| || ||||||||||| || || ||||||| || || ||| Sbjct 18459 AAGGATGCCGGCCAGATTGCCGGCCTTAATGTTCTGCGCGTTGTCAATGAGCCCACAGCT 18400 Query 550511 GCTGCACTTGCATATGGACTTGATAAACATAATGATC 550547 ||||| | || || || || || || | ||||||| Sbjct 18399 GCTGCCTTAGCCTACGGTCTCGAGAAGGAGAATGATC 18363 >seq6412 Length=17604 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| || || ||||| | || |||||| ||||| ||||||| || ||||| Sbjct 16496 GAGACGAAGGACGAGATGCAAAGTCGATTCTTTTTGGATATTATAATCAGATAACGTTCT 16555 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 |||||| ||||| || || || || || | | |||||| || || || || || || Sbjct 16556 GCCATCTTCTAGTTGCTTCCCAGCGAAGATCAACCGTTGCTGGTCGGGGGGGATACCCTC 16615 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 |||||||| |||||| || || || || || || | || | | ||| || | Sbjct 16616 CTTATCTTGGATTTTTGACTTGACATTATCGATCGTGTCTGAC-GACTCGACTTCTAGCG 16674 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || || ||||| || || || |||||||||||||| Sbjct 16675 TAATCGTCTTCCCAGTTAGGGTCTTGACGAAAATTTGCAT 16714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028837491298300