Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq3638 89.7 4e-12
seq6412 87.8 1e-11
>seq3638
Length=54862
Score = 89.7 bits (98), Expect = 4e-12
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
|||| | ||| || | || || || || || || || || || ||||| ||||| |||
Sbjct 18519 GTTAAGAATGGTGTCGTTACCGTTCCTGCTTACTTCAACGATTCTCAACGGCAAGCCACT 18460
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|| ||||| || | ||||| || ||||||||||| || || ||||||| || || |||
Sbjct 18459 AAGGATGCCGGCCAGATTGCCGGCCTTAATGTTCTGCGCGTTGTCAATGAGCCCACAGCT 18400
Query 550511 GCTGCACTTGCATATGGACTTGATAAACATAATGATC 550547
||||| | || || || || || || | |||||||
Sbjct 18399 GCTGCCTTAGCCTACGGTCTCGAGAAGGAGAATGATC 18363
>seq6412
Length=17604
Score = 87.8 bits (96), Expect = 1e-11
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315
|||||| || || ||||| | || |||||| ||||| ||||||| || |||||
Sbjct 16496 GAGACGAAGGACGAGATGCAAAGTCGATTCTTTTTGGATATTATAATCAGATAACGTTCT 16555
Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375
|||||| ||||| || || || || || | | |||||| || || || || || ||
Sbjct 16556 GCCATCTTCTAGTTGCTTCCCAGCGAAGATCAACCGTTGCTGGTCGGGGGGGATACCCTC 16615
Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434
|||||||| |||||| || || || || || || | || | | ||| || |
Sbjct 16616 CTTATCTTGGATTTTTGACTTGACATTATCGATCGTGTCTGAC-GACTCGACTTCTAGCG 16674
Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
||| || || ||||| || || || ||||||||||||||
Sbjct 16675 TAATCGTCTTCCCAGTTAGGGTCTTGACGAAAATTTGCAT 16714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028837491298300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |