Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6412 102 5e-16 seq3638 87.8 1e-11 >seq6412 Length=17604 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || ||||| | || |||||| | ||||||||||| || || Sbjct 16493 ACGGAGACGAAGGACGAGATGCAAAGTCGATTCTTTTTGGATATTATAATCAGATAACGT 16552 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 |||| |||||| |||||||| ||||| || || | ||||| || || || || || || Sbjct 16553 TCTGCCATCTTCTAGTTGCTTCCCAGCGAAGATCAACCGTTGCTGGTCGGGGGGGATACC 16612 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||| ||||| || ||| |||||| || || || || | | | | ||| | Sbjct 16613 CTCCTTATCTTGGATTTTTGACTTGACATTATCGATCGTGTCTGACGACTCGA-CTTCTA 16671 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || || || ||||| ||||||||||| Sbjct 16672 GCGTAATCGTCTTCCCAGTTAGGGTCTTGACGAAAATTTG 16711 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || ||||| | ||| ||||| | ||||||||||| || || Sbjct 16721 ACGGAGACGAAGGACGAGATGCAAAGTAGACTCTTTCTGGATATTATAATCAGACAGCGT 16780 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || || ||||| || |||||||| || | ||||| || || || || || || Sbjct 16781 CCGGCCGTCCTCCAGTTGTTTCCCAGCAAAGATCAACCGTTGCTGGTCGGGGGGGATGCC 16840 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||| || || |||||| ||||||| || || ||||| | || | || ||| | Sbjct 16841 CTCCTTATCCTGGATCTTTGATTTGACATTATCGATCGTATCTGATGACTCAA-CTTCTA 16899 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || || || ||||| ||||||||||| Sbjct 16900 GCGTAATCGTCTTCCCAGTTAGGGTCTTGACGAAAATTTG 16939 >seq3638 Length=54862 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||| ||||| || || || || ||||||||||| ||||| ||||| ||||| || | Sbjct 18503 TTACCGTTCCTGCTTACTTCAACGATTCTCAACGGCAAGCCACTAAGGATGCCGGCCAGA 18444 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 |||| || ||||||||| | || || | ||||| || ||||| || || | || || | Sbjct 18443 TTGCCGGCCTTAATGTTCTGCGCGTTGTCAATGAGCCCACAGCTGCTGCCTTAGCCTACG 18384 Query 474864 GTCTTGATAAG 474874 |||| || ||| Sbjct 18383 GTCTCGAGAAG 18373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267807301633160