Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2116 158 2e-33 seq6412 143 4e-29 seq3638 123 3e-23 seq3205 113 6e-20 seq4403 100 4e-16 >seq2116 Length=14111 Score = 158 bits (174), Expect = 2e-33 Identities = 250/358 (70%), Gaps = 3/358 (1%) Strand=Plus/Plus Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689 |||| || ||||| ||| | ||||| | ||||||||||||| || || | | Sbjct 1603 CTCCGGAGGAAATCTCGGCCATGGTTCTTGGGAAGATGAAGGAGATCGCCGAGAGCTACC 1662 Query 195690 TGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAAC 195749 | || || || || | | || || || ||||| || || ||||||| |||| | || Sbjct 1663 TTGGAAAGACAGTCACCCACGCTGTCGTCACTGTTCCCGCATACTTCAATGATGCCCAGA 1722 Query 195750 GACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATG 195809 | ||||| || ||||| || | | ||||||| ||||| | | || | | |||||| Sbjct 1723 GGCAGGCTACCAAGGATGCCGGTACTATTGCCGGTCTTACCGTCCTCCGTGTCGTCAATG 1782 Query 195810 AACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATG 195869 |||| || || || || || ||||| ||| ||||||||| | || || ||| | Sbjct 1783 AACCTACCGCCGCAGCTATCGCTTACGGTTTGGACAAGACCGGTGATGAGCGCCAAATCG 1842 Query 195870 TATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTG 195929 | || | |||||||||||||||||| || |||||||| || || ||||| || Sbjct 1843 TCGTG---TATGATCTCGGTGGTGGTACTTTCGATGTCTCCCTCCTGTCCATTGACAATG 1899 Query 195930 GTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || | || || || |||||| || ||||| |||||||| |||||||||||||| || Sbjct 1900 GTGTCTTTGAGGTCCTGGCTACCGCCGGTGACACTCATCTCGGTGGTGAAGATTTTGA 1957 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361 || ||||||||||| ||||| || ||||| || |||||||| ||| |||| || Sbjct 1226 ATCGGTATCGATTTGGGAACGACCTACTCCTGCGTTGGTGTTATGCAGAATGGCAAGGTC 1285 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 || ||| | ||||||||||||||||||| || || || || || || || || || Sbjct 1286 GAAATTCTGGTTAATGACCAAGGAAACCGTATCACACCTTCATATGTCGCTTTCACGGAC 1345 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCA 195456 | || ||| | |||| || |||||||| ||||| Sbjct 1346 GAAGAGCGTTTGATTGGTGACGCCGCAAAGAATCA 1380 >seq6412 Length=17604 Score = 143 bits (158), Expect = 4e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||| ||||| || || || || || || || ||||||||| Sbjct 16714 ATGCAAATTTTCGTCAAGACCCTAACTGGGAAGACGATTACGCTAGAAGTCGAGTCGTCA 16655 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| |||||||| |||| | || || ||||||||||| || || || ||||| ||| Sbjct 16654 GACACGATCGATAATGTCAAGTCAAAAATCCAAGATAAGGAGGGTATCCCCCCCGACCAG 16595 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 ||||| | || || ||||| || || || |||||||| | || | ||||||| || Sbjct 16594 CAACGGTTGATCTTCGCTGGGAAGCAACTAGAAGATGGCAGAACGTTATCTGATTATAAT 16535 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | ||||| || || ||| | || || || || | || || ||||| Sbjct 16534 ATCCAAAAAGAATCGACTTTGCATCTCGTCCTTCGTCTCCGTGGTGG 16488 Score = 132 bits (146), Expect = 6e-26 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || ||||| || |||||||| ||||| |||||| ||||| || |||||| | ||||| Sbjct 17146 ACGGGAAAGACCATCACCCTAGAGGTCGAGTCGAGCGACACGATTGATAACGTTAAAGCT 17087 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 |||||||| || ||||| ||||| || || || || || || | || |||||||| || Sbjct 17086 AAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGGTTGATATTTGCTGGCAAG 17027 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 || || || ||||| || || | ||||||||||| | || |||||||| ||| | || Sbjct 17026 CAACTGGAGGATGGCCGGACGTTATCTGATTACAACATACAGAAGGAGTCCACTTTGCAT 16967 Query 172066 CTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093 || || || | || || || || ||||| Sbjct 16966 CTCGTCCTCCGTCTCCGTGGCGGAATGCAA 16937 >seq3638 Length=54862 Score = 123 bits (136), Expect = 3e-23 Identities = 226/330 (68%), Gaps = 12/330 (4%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||| ||||| ||| ||| | |||| ||| |||| || ||| || || || Sbjct 18558 AAGATGAAGGAAACTGCTGAAGCTTACTTGGGCAAATCTGTTAAGAATGGTGTCGTTACC 18499 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || ||||||||||||| ||||| ||||| || || || ||||| || | ||||| Sbjct 18498 GTTCCTGCTTACTTCAACGATTCTCAACGGCAAGCCACTAAGGATGCCGGCCAGATTGCC 18439 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || || ||| | || ||||||| || ||||| ||||| | || || ||||| Sbjct 18438 GGCCTTAATGTTCTGCGCGTTGTCAATGAGCCCACAGCTGCTGCCTTAGCCTACGGTCTC 18379 Query 195842 GACAAGAACAAGGA-CGAAGATAAAAATGTATTG--ATCTTTGATCTCGGTGGTGGTACG 195898 || ||| | || || || | ||||| ||| || |||||||| ||||| Sbjct 18378 GAGAAGGAGAATGATCGCA---------TTATTGCTGTCTACGACCTCGGTGGCGGTACT 18328 Query 195899 TTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGT 195958 || ||| |||| |||| | || || || | || || || || | || || Sbjct 18327 TTCGATATCTCTATTCTTGAAATCCAAAAGGGCGTTTTTGAGGTGAAATCCACCAACGGC 18268 Query 195959 GATACTCATCTAGGTGGTGAAGATTTCGAT 195988 || || ||||| |||||||| ||||||||| Sbjct 18267 GACACCCATCTTGGTGGTGAGGATTTCGAT 18238 >seq3205 Length=38634 Score = 113 bits (124), Expect = 6e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171870 CTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAAT 171929 ||| || || ||||| || || || || || ||||| ||||| |||||| |||||||| Sbjct 37565 CTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTAGAGTCGAGCGACACAAT 37506 Query 171930 CGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACT 171989 ||| || | || | |||||||| |||||||| || |||||||||||||| || || | Sbjct 37505 CGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGGATTCCACCCGATCAACAGCGTTT 37446 Query 171990 TATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAA 172049 ||||| || || || || || || || || || || || || ||||| |||| || Sbjct 37445 AATTTTCGCCGGAAAGCAACTCGAGGACGGTCGGACACTGAACGACTACAATATTCAGAA 37386 Query 172050 GG 172051 || Sbjct 37385 GG 37384 >seq4403 Length=14617 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 171954 AGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGA 172013 ||||||||| || || || || || || || || || ||||| || || || ||||| || Sbjct 5085 AGATAAGGAGGGAATCCCTCCAGACCAACAGCGGCTAATTTTCGCCGGCAAGCAGCTGGA 5026 Query 172014 AGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 ||||| || || ||| | ||||| ||| |||| |||||||||||||| ||||| ||| | Sbjct 5025 GGATGGCCGGACACTCTCAGATTATAACATTCAGAAGGAGTCTACTCTCCACCTGGTTTT 4966 Query 172074 AAGGCTTCGGGGTGGTGC 172091 | | || |||||||| Sbjct 4965 GCGCTTGCGCGGTGGTGC 4948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657791104162400