Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq2116 158 2e-33
seq6412 143 4e-29
seq3638 123 3e-23
seq3205 113 6e-20
seq4403 100 4e-16
>seq2116
Length=14111
Score = 158 bits (174), Expect = 2e-33
Identities = 250/358 (70%), Gaps = 3/358 (1%)
Strand=Plus/Plus
Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689
|||| || ||||| ||| | ||||| | ||||||||||||| || || | |
Sbjct 1603 CTCCGGAGGAAATCTCGGCCATGGTTCTTGGGAAGATGAAGGAGATCGCCGAGAGCTACC 1662
Query 195690 TGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAAC 195749
| || || || || | | || || || ||||| || || ||||||| |||| | ||
Sbjct 1663 TTGGAAAGACAGTCACCCACGCTGTCGTCACTGTTCCCGCATACTTCAATGATGCCCAGA 1722
Query 195750 GACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATG 195809
| ||||| || ||||| || | | ||||||| ||||| | | || | | ||||||
Sbjct 1723 GGCAGGCTACCAAGGATGCCGGTACTATTGCCGGTCTTACCGTCCTCCGTGTCGTCAATG 1782
Query 195810 AACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATG 195869
|||| || || || || || ||||| ||| ||||||||| | || || ||| |
Sbjct 1783 AACCTACCGCCGCAGCTATCGCTTACGGTTTGGACAAGACCGGTGATGAGCGCCAAATCG 1842
Query 195870 TATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTG 195929
| || | |||||||||||||||||| || |||||||| || || ||||| ||
Sbjct 1843 TCGTG---TATGATCTCGGTGGTGGTACTTTCGATGTCTCCCTCCTGTCCATTGACAATG 1899
Query 195930 GTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
|| | || || || |||||| || ||||| |||||||| |||||||||||||| ||
Sbjct 1900 GTGTCTTTGAGGTCCTGGCTACCGCCGGTGACACTCATCTCGGTGGTGAAGATTTTGA 1957
Score = 91.5 bits (100), Expect = 2e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361
|| ||||||||||| ||||| || ||||| || |||||||| ||| |||| ||
Sbjct 1226 ATCGGTATCGATTTGGGAACGACCTACTCCTGCGTTGGTGTTATGCAGAATGGCAAGGTC 1285
Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421
|| ||| | ||||||||||||||||||| || || || || || || || || ||
Sbjct 1286 GAAATTCTGGTTAATGACCAAGGAAACCGTATCACACCTTCATATGTCGCTTTCACGGAC 1345
Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCA 195456
| || ||| | |||| || |||||||| |||||
Sbjct 1346 GAAGAGCGTTTGATTGGTGACGCCGCAAAGAATCA 1380
>seq6412
Length=17604
Score = 143 bits (158), Expect = 4e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || ||||| ||||| || || || || || || || |||||||||
Sbjct 16714 ATGCAAATTTTCGTCAAGACCCTAACTGGGAAGACGATTACGCTAGAAGTCGAGTCGTCA 16655
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| |||||||| |||| | || || ||||||||||| || || || ||||| |||
Sbjct 16654 GACACGATCGATAATGTCAAGTCAAAAATCCAAGATAAGGAGGGTATCCCCCCCGACCAG 16595
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
||||| | || || ||||| || || || |||||||| | || | ||||||| ||
Sbjct 16594 CAACGGTTGATCTTCGCTGGGAAGCAACTAGAAGATGGCAGAACGTTATCTGATTATAAT 16535
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088
| ||||| || || ||| | || || || || | || || |||||
Sbjct 16534 ATCCAAAAAGAATCGACTTTGCATCTCGTCCTTCGTCTCCGTGGTGG 16488
Score = 132 bits (146), Expect = 6e-26
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945
|| ||||| || |||||||| ||||| |||||| ||||| || |||||| | |||||
Sbjct 17146 ACGGGAAAGACCATCACCCTAGAGGTCGAGTCGAGCGACACGATTGATAACGTTAAAGCT 17087
Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005
|||||||| || ||||| ||||| || || || || || || | || |||||||| ||
Sbjct 17086 AAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGGTTGATATTTGCTGGCAAG 17027
Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065
|| || || ||||| || || | ||||||||||| | || |||||||| ||| | ||
Sbjct 17026 CAACTGGAGGATGGCCGGACGTTATCTGATTACAACATACAGAAGGAGTCCACTTTGCAT 16967
Query 172066 CTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093
|| || || | || || || || |||||
Sbjct 16966 CTCGTCCTCCGTCTCCGTGGCGGAATGCAA 16937
>seq3638
Length=54862
Score = 123 bits (136), Expect = 3e-23
Identities = 226/330 (68%), Gaps = 12/330 (4%)
Strand=Plus/Minus
Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721
||||||||||| ||||| ||| ||| | |||| ||| |||| || ||| || || ||
Sbjct 18558 AAGATGAAGGAAACTGCTGAAGCTTACTTGGGCAAATCTGTTAAGAATGGTGTCGTTACC 18499
Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781
|| ||||||||||||| ||||| ||||| || || || ||||| || | |||||
Sbjct 18498 GTTCCTGCTTACTTCAACGATTCTCAACGGCAAGCCACTAAGGATGCCGGCCAGATTGCC 18439
Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841
|| || || ||| | || ||||||| || ||||| ||||| | || || |||||
Sbjct 18438 GGCCTTAATGTTCTGCGCGTTGTCAATGAGCCCACAGCTGCTGCCTTAGCCTACGGTCTC 18379
Query 195842 GACAAGAACAAGGA-CGAAGATAAAAATGTATTG--ATCTTTGATCTCGGTGGTGGTACG 195898
|| ||| | || || || | ||||| ||| || |||||||| |||||
Sbjct 18378 GAGAAGGAGAATGATCGCA---------TTATTGCTGTCTACGACCTCGGTGGCGGTACT 18328
Query 195899 TTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGT 195958
|| ||| |||| |||| | || || || | || || || || | || ||
Sbjct 18327 TTCGATATCTCTATTCTTGAAATCCAAAAGGGCGTTTTTGAGGTGAAATCCACCAACGGC 18268
Query 195959 GATACTCATCTAGGTGGTGAAGATTTCGAT 195988
|| || ||||| |||||||| |||||||||
Sbjct 18267 GACACCCATCTTGGTGGTGAGGATTTCGAT 18238
>seq3205
Length=38634
Score = 113 bits (124), Expect = 6e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 171870 CTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAAT 171929
||| || || ||||| || || || || || ||||| ||||| |||||| ||||||||
Sbjct 37565 CTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTAGAGTCGAGCGACACAAT 37506
Query 171930 CGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACT 171989
||| || | || | |||||||| |||||||| || |||||||||||||| || || |
Sbjct 37505 CGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGGATTCCACCCGATCAACAGCGTTT 37446
Query 171990 TATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAA 172049
||||| || || || || || || || || || || || || ||||| |||| ||
Sbjct 37445 AATTTTCGCCGGAAAGCAACTCGAGGACGGTCGGACACTGAACGACTACAATATTCAGAA 37386
Query 172050 GG 172051
||
Sbjct 37385 GG 37384
>seq4403
Length=14617
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 171954 AGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGA 172013
||||||||| || || || || || || || || || ||||| || || || ||||| ||
Sbjct 5085 AGATAAGGAGGGAATCCCTCCAGACCAACAGCGGCTAATTTTCGCCGGCAAGCAGCTGGA 5026
Query 172014 AGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073
||||| || || ||| | ||||| ||| |||| |||||||||||||| ||||| ||| |
Sbjct 5025 GGATGGCCGGACACTCTCAGATTATAACATTCAGAAGGAGTCTACTCTCCACCTGGTTTT 4966
Query 172074 AAGGCTTCGGGGTGGTGC 172091
| | || ||||||||
Sbjct 4965 GCGCTTGCGCGGTGGTGC 4948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657791104162400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |