Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq6412 129 1e-24
>seq6412
Length=17604
Score = 129 bits (142), Expect = 1e-24
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | || || | || | ||| ||||||| |||||| |||||||||||
Sbjct 16713 ATCCCACCACGGAGACGAAGGACGAGATGCAAAGTAGACTCTTTCTGGATATTATAATCA 16772
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | || |||| |||| |||||| |||||||| || || | || ||||| ||
Sbjct 16773 GACAGCGTCCGGCCGTCCTCCAGTTGTTTCCCAGCAAAGATCAACCGTTGCTGGTCGGGG 16832
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || ||||| || || || ||| |||||| || |||||||| || ||
Sbjct 16833 GGGATGCCCTCCTTATCCTGGATCTTTGATTTGACATTATCGATCGTATCTGATGACTCA 16892
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|||||||| ||||| || || ||||||| || || | ||| || ||||||
Sbjct 16893 ACTTCTAGCGTAATCGTCTTCCCAGTTAGGGTCTTGACGAAAATTTGCATT 16943
Score = 113 bits (124), Expect = 8e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902
||||| | || || | || | ||| ||||| | ||||| ||||||||||| |||
Sbjct 16488 CCACCACGGAGACGAAGGACGAGATGCAAAGTCGATTCTTTTTGGATATTATAATCAGAT 16547
Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962
|| | || | || || | ||| || ||||| || || || | || ||||| || ||
Sbjct 16548 AACGTTCTGCCATCTTCTAGTTGCTTCCCAGCGAAGATCAACCGTTGCTGGTCGGGGGGG 16607
Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022
|| || || |||||||| ||||| || |||||| || || |||||||| || |||
Sbjct 16608 ATACCCTCCTTATCTTGGATTTTTGACTTGACATTATCGATCGTGTCTGACGACTCGACT 16667
Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| ||||| || || ||||||| || || | ||| || |||||
Sbjct 16668 TCTAGCGTAATCGTCTTCCCAGTTAGGGTCTTGACGAAAATTTGCAT 16714
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925
||| ||||| | ||| || || || ||||| ||||| | || | || |||| |||
Sbjct 16967 ATGCAAAGTGGACTCCTTCTGTATGTTGTAATCAGATAACGTCCGGCCATCCTCCAGTTG 17026
Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985
|| |||||||| || || | |||||||||||| || || || || || || || || ||
Sbjct 17027 CTTGCCAGCAAATATCAACCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTT 17086
Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045
| ||| || ||| || || || ||| || || ||||| || ||||| || || ||
Sbjct 17087 AGCTTTAACGTTATCAATCGTGTCGCTCGACTCGACCTCTAGGGTGATGGTCTTTCCCGT 17146
Query 172046 TA 172047
||
Sbjct 17147 TA 17148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905037905886000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |