Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5240 87.8 2e-11 seq2292 87.8 2e-11 >seq5240 Length=8030 Score = 87.8 bits (96), Expect = 2e-11 Identities = 116/157 (74%), Gaps = 13/157 (8%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTG--CCCGAGAAAA 869276 |||||||| | |||||||||||| | ||| ||||||| || || || || ||||||| Sbjct 4284 CCGGGCATCAAGCCGCGCTTCTTCAACCAGAAGATGGA--AGCAAATGAACCTGAGAAAA 4341 Query 869277 AGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCT 869336 |||| ||||||||||| || ||| | | || || | |||||| ||||| ||||| Sbjct 4342 AGATACCCTCGACGGCAGCGAAGGCCACCAGTCGTTGGGCAAA--AGTCGA----CTCCT 4395 Query 869337 TG---TTGATCCACTTCATCGCCCAGTCGGCCTTTTT 869370 || | |||||| | || ||||| || ||||| || Sbjct 4396 TGTCCTGGATCCAATGAATGGCCCAATCAGCCTTCTT 4432 >seq2292 Length=13796 Score = 87.8 bits (96), Expect = 2e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||||||| ||||| ||||| ||||| | ||||| || | ||| | || || Sbjct 6209 GACAGCATCGGAGGCACAGTGACCTGCGTTATAAGGAACGTCCCCGTAGGATTGGGGGAA 6150 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || |||||||| || | || || ||| || ||||| ||||| || || || ||| Sbjct 6149 CCATGCTTTGATAAATTGGAAGCTAAGCTGGCTCACGCGATGCTCAGCATTCCCGCAACC 6090 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTTTGCGGGT 19199 || |||||||||||||| || ||||||||| Sbjct 6089 AAAGGATTCGAGATTGGGTCAGGATTTGCGGGT 6057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106427699198390