Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5240 91.5 2e-12 >seq5240 Length=8030 Score = 91.5 bits (100), Expect = 2e-12 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 794584 GGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATG 794643 || ||||| | ||||||||||||||| | |||||| |||||||||||||||||||| || Sbjct 4547 GGCTCCTTAATGTAGGTGTCGATGAGCAACGAGTATGTCTCTGAGTGGATGTTTTCCATC 4606 Query 794644 GCGATCTGGAAGCCATAAAAGCA 794666 |||||| || ||||| ||||| Sbjct 4607 ATGATCTGAAATCCATAGAAGCA 4629 Score = 87.8 bits (96), Expect = 3e-11 Identities = 116/157 (74%), Gaps = 13/157 (8%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTG--CCCGAGAAAA 794437 |||||||| | |||||||||||| | ||| ||||||| || || || || ||||||| Sbjct 4284 CCGGGCATCAAGCCGCGCTTCTTCAACCAGAAGATGG--AAGCAAATGAACCTGAGAAAA 4341 Query 794438 AGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT 794497 |||| ||||||||||| || ||| | || || || | ||||||| ||| | ||| | Sbjct 4342 AGATACCCTCGACGGCAGCGAAGGCCACCAGTCGTTGGGCAAAA--GTCGA----CTCCT 4395 Query 794498 TG---TTGATCCACTTCATCGCCCACTCTGCCTTTTT 794531 || | |||||| | || ||||| || ||||| || Sbjct 4396 TGTCCTGGATCCAATGAATGGCCCAATCAGCCTTCTT 4432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915324132556130