Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq6412 91.5 1e-13
seq4403 86.0 4e-12
>seq6412
Length=17604
Score = 91.5 bits (100), Expect = 1e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || || | ||| ||||||||| ||||| || || |||| | || ||||
Sbjct 16959 AGGACGAGATGCAAAGTGGACTCCTTCTGTATGTTGTAATCAGATAACGTCCGGCCATCC 17018
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||||||||| || || || |||| || || ||||| | || | |||||||||||
Sbjct 17019 TCCAGTTGCTTGCCAGCAAATATCAACCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCC 17078
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || ||| ||| | |||| || | | |||||| || | ||| ||||||
Sbjct 17079 TGAATCTTAGCTTTAACGTTATCAATCGTGTCGCTCGACTCGACCTCTAGGGTGATGGTC 17138
Query 34946 TTTCCCGT 34953
||||||||
Sbjct 17139 TTTCCCGT 17146
Score = 84.2 bits (92), Expect = 1e-11
Identities = 137/195 (70%), Gaps = 8/195 (4%)
Strand=Plus/Plus
Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846
|| || || || ||||| || |||| | | |||| || |||||||| || ||||||
Sbjct 16524 TCTTTTTGGATATTATAATCAGATAACGTTCTGCCATCTTCTAGTTGCTTCCCAGCGAAG 16583
Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906
|||| ||||||||||| | || | |||||||| || | |||||| ||||| ||
Sbjct 16584 ATCAACCGTTGCTGGTCGGGGGGGATACCCTCCTTATCTTGGATTTTTGACTTGAC--AT 16641
Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962
||||||| || | |||||| || | || || ||||| || || ||||||||
Sbjct 16642 --TATCGATCGTGTCTGACGACTCGACTTCTAGCGTAATCGTCTTCCCAGTTAGGGTCTT 16699
Query 34963 TACAAAGATCTGCAT 34977
|| || || |||||
Sbjct 16700 GACGAAAATTTGCAT 16714
Score = 82.4 bits (90), Expect = 5e-11
Identities = 137/196 (70%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||| ||||| || ||||| || || || | || | || |||||||| || || || ||
Sbjct 16751 CTCTTTCTGGATATTATAATCAGACAGCGTCCGGCCGTCCTCCAGTTGTTTCCCAGCAAA 16810
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||||| ||||||||||| | || | |||||||| || | || ||| |||||| |
Sbjct 16811 GATCAACCGTTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTTGATTTGAC--A 16868
Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961
| ||||||| || | ||| || || | || || ||||| || || |||||||
Sbjct 16869 T--TATCGATCGTATCTGATGACTCAACTTCTAGCGTAATCGTCTTCCCAGTTAGGGTCT 16926
Query 34962 TTACAAAGATCTGCAT 34977
| || || || |||||
Sbjct 16927 TGACGAAAATTTGCAT 16942
>seq4403
Length=14617
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/139 (74%), Gaps = 1/139 (1%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || | ||| | || |||||||| | || |||||||||||||||||| || ||
Sbjct 4951 CCACCGCGCAAGCGCAAAACCAGGTGGAGAGTAGACTCCTTCTGAATGTTATAATCTGAG 5010
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| | || |||| ||||| ||||| |||||||| || || || || |||||| | ||
Sbjct 5011 AGTGTCCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATTAGCCGCTGTTGGTCTGGAGGG 5070
Query 34871 ACCCCCTCCTTGTC-GTTT 34888
| |||||||| || ||||
Sbjct 5071 ATTCCCTCCTTATCTGTTT 5089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325658385466730
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |