Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq6412 91.5 1e-13 seq4403 86.0 4e-12 >seq6412 Length=17604 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||||||||| ||||| || || |||| | || |||| Sbjct 16959 AGGACGAGATGCAAAGTGGACTCCTTCTGTATGTTGTAATCAGATAACGTCCGGCCATCC 17018 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| || || || |||| || || ||||| | || | ||||||||||| Sbjct 17019 TCCAGTTGCTTGCCAGCAAATATCAACCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCC 17078 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||| ||| | |||| || | | |||||| || | ||| |||||| Sbjct 17079 TGAATCTTAGCTTTAACGTTATCAATCGTGTCGCTCGACTCGACCTCTAGGGTGATGGTC 17138 Query 34946 TTTCCCGT 34953 |||||||| Sbjct 17139 TTTCCCGT 17146 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/195 (70%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || || || ||||| || |||| | | |||| || |||||||| || |||||| Sbjct 16524 TCTTTTTGGATATTATAATCAGATAACGTTCTGCCATCTTCTAGTTGCTTCCCAGCGAAG 16583 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| ||||||||||| | || | |||||||| || | |||||| ||||| || Sbjct 16584 ATCAACCGTTGCTGGTCGGGGGGGATACCCTCCTTATCTTGGATTTTTGACTTGAC--AT 16641 Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962 ||||||| || | |||||| || | || || ||||| || || |||||||| Sbjct 16642 --TATCGATCGTGTCTGACGACTCGACTTCTAGCGTAATCGTCTTCCCAGTTAGGGTCTT 16699 Query 34963 TACAAAGATCTGCAT 34977 || || || ||||| Sbjct 16700 GACGAAAATTTGCAT 16714 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| || ||||| || || || | || | || |||||||| || || || || Sbjct 16751 CTCTTTCTGGATATTATAATCAGACAGCGTCCGGCCGTCCTCCAGTTGTTTCCCAGCAAA 16810 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| ||||||||||| | || | |||||||| || | || ||| |||||| | Sbjct 16811 GATCAACCGTTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTTGATTTGAC--A 16868 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | ||||||| || | ||| || || | || || ||||| || || ||||||| Sbjct 16869 T--TATCGATCGTATCTGATGACTCAACTTCTAGCGTAATCGTCTTCCCAGTTAGGGTCT 16926 Query 34962 TTACAAAGATCTGCAT 34977 | || || || ||||| Sbjct 16927 TGACGAAAATTTGCAT 16942 >seq4403 Length=14617 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/139 (74%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | ||| | || |||||||| | || |||||||||||||||||| || || Sbjct 4951 CCACCGCGCAAGCGCAAAACCAGGTGGAGAGTAGACTCCTTCTGAATGTTATAATCTGAG 5010 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| ||||| ||||| |||||||| || || || || |||||| | || Sbjct 5011 AGTGTCCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATTAGCCGCTGTTGGTCTGGAGGG 5070 Query 34871 ACCCCCTCCTTGTC-GTTT 34888 | |||||||| || |||| Sbjct 5071 ATTCCCTCCTTATCTGTTT 5089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325658385466730