Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq5240 120 3e-22 seq6412 87.8 2e-12 >seq5240 Length=8030 Score = 120 bits (132), Expect = 3e-22 Identities = 335/512 (65%), Gaps = 9/512 (2%) Strand=Plus/Plus Query 120355 TACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATA 120414 || |||||||| || ||||| || ||||| ||||| || ||| || || | | ||| Sbjct 3939 TAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTACCAGCCAAAGATATACTTTCCATG 3998 Query 120415 AACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGG 120474 || || || || ||| || | || ||| ||| | || | ||||| || | Sbjct 3999 AAATCAAAGGGATTGGTCACATTGTAGTGCTTCTTGTTTCCAAGGGCAACGAGGAGCCTA 4058 Query 120475 TCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACC 120534 || || || ||||| ||||| | ||||| || || |||||| || |||| | || Sbjct 4059 TCAGCAACGAACTCGATGTATTGACACATCAGCTTCGAGTTCATTCCGAGCAGAGAAACT 4118 Query 120535 GGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAGC 120594 || | ||| || || ||||| | |||||| | || || || ||| || | | Sbjct 4119 GGAAGGGCCTCGGTTAAGAACTCTTGCTCAATTGCAACAGCGTCAGTGATAATATCTTGG 4178 Query 120595 ATAGTGTG---GCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAG 120651 || | || ||| | || || |||| | | | | ||||| |||||| Sbjct 4179 ATGACCTCCTTGCTGGGGCGGTGGT-TTAGATGGGAGAACA-----AGAGGCAGGCAAAG 4232 Query 120652 TCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATG 120711 || ||||||||||||||||| ||||| |||||||| || || |||| |||||||| Sbjct 4233 TCGGTGTGCAGGCCCTCGTCACGCGAAATCAGCTCATTTGAGAATGTCAATCCGGGCATC 4292 Query 120712 ATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCC 120771 | ||| | |||| | |||| |||| ||||| || || || || | ||||| Sbjct 4293 AAGCCGCGCTTCTTCAACCAGAAGATGGAAGCAAATGAACCTGAGAAAAAGATACCCTCG 4352 Query 120772 ACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTC 120831 ||| || ||||| |||| || | ||| || |||| | |||| | |||||| | Sbjct 4353 ACGGCAGCGAAGGCCACCAGTCGTTGGGCAAAAGTCGACTCCTTGTCCTGGATCCAATGA 4412 Query 120832 ATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 |||||||| || ||||| || || | ||| || Sbjct 4413 ATGGCCCAATCAGCCTTCTTACGGATGCAGGG 4444 >seq6412 Length=17604 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||||||||| ||||| ||||| || ||| || | |||||| || || || | Sbjct 16746 GTAGACTCTTTCTGGATATTATAATCAGACAGCGTCCGGCC--GTCCTCCAGTTGTTTCC 16803 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | ||| ||||||||||| |||||||| ||||| || ||||||| | Sbjct 16804 CAGCAAAGATCAACCGTTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTTGATT 16863 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||| || | | ||| || || | || | || || || || || | Sbjct 16864 TGACATTATCGATCGTATCTGATGACTCAACTTCTAGCGTAATCGTCTTCCCAGTTAGGG 16923 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||| ||||| Sbjct 16924 TCTTGACGAAAATTTGCAT 16942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483368409270800