Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08- 04] 8,670 sequences; 54,153,615 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5240 107 3e-17 >seq5240 Length=8030 Score = 107 bits (118), Expect = 3e-17 Identities = 129/174 (74%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 1455897 GTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTT 1455956 ||||| || || ||| ||||| ||||||||||| ||||||||||| || ||||| Sbjct 4719 GTCCTGGCGTTCTTT-GCCGCGTCAGATGGCATCGTCAACGAGAACCTGGTCGAGCGCTT 4661 Query 1455957 TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGA 1456016 | |||||||| | || || || |||| || || || || |||||| || || Sbjct 4660 CAGCGGCGAGGTCCAGATCCCTGAAGCTCGTTGCTTCTATGGATTTCAGATCATGATGGA 4601 Query 1456017 AAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 |||||||||||| || || |||||| | || |||||||||||| | ||||| || Sbjct 4600 AAACATCCACTCAGAGACATACTCGTTGCTCATCGACACCTACATTAAGGAGCC 4547 Score = 86.0 bits (94), Expect = 9e-11 Identities = 116/156 (74%), Gaps = 13/156 (8%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAA---CAAGGAGGGCCTCGACACTTTGCCG 1456179 || ||||| || ||||| || | |||||| | ||||||| ||||| |||||| Sbjct 4432 AAGAAGGCTGATTGGGCCATTCATTGGATCCAGGACAAGGAG----TCGACT-TTTGCCC 4378 Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGG--CAGTTTCTGCGC 1456236 | || || || | ||| || || |||||||| ||||||||||| || || || || | Sbjct 4377 AACGACTGGTGGCCTTCGCTGCCGTCGAGGGTATCTTTTTCTCAGGTTCATTTGCTTC-- 4320 Query 1456237 CATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 |||||| ||| | |||||||||||| | |||||||| Sbjct 4319 CATCTTCTGGTTGAAGAAGCGCGGCTTGATGCCCGG 4284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176974962564540